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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v1999250.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | Nin-like | ||||||||
Protein Properties | Length: 976aa MW: 107671 Da PI: 5.2371 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 90.6 | 1.2e-28 | 586 | 636 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Lj5g3v1999250.2 586 EKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 636 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.677 | 575 | 656 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.7E-25 | 589 | 636 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 8.83E-23 | 879 | 966 | No hit | No description |
SMART | SM00666 | 1.4E-25 | 881 | 963 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 8.4E-26 | 881 | 962 | No hit | No description |
Pfam | PF00564 | 1.2E-18 | 881 | 962 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 25.247 | 881 | 963 | IPR000270 | PB1 domain |
CDD | cd06407 | 2.92E-38 | 882 | 962 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010118 | Biological Process | stomatal movement | ||||
GO:0010167 | Biological Process | response to nitrate | ||||
GO:0042128 | Biological Process | nitrate assimilation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 976 aa Download sequence Send to blast |
MSESDEEKPD FPQKARPTEE PGFAMDFDLD LESSWPMDHM SFVSNPMSPF LFSTMSDQPC 60 SPLWAFSDGE DDRHTSLAAP AFSDCHKIFP CDSNSVTEKP MENDDNNKLL PPVVPQPPIE 120 NLDRFCVIKE RMTQALRHFK ELTELNVLAQ VWAPVRNGNR YVLTTSGQPF VLDPHSNGLH 180 QYRTASLMYM FSADGENDGT LGLPGRVFQH KLPEWTPNVL YYSNKEYPRR DHAEHYNVRG 240 TLALPVFEPA LQSCVGVLEL IMTSQKINYG PEVEKICKAL EAVNLKSSEI LEPPYTQICN 300 EGRQNALSEI LEILTVVCET HNLPLAQTWV PCRHRSVLAH GGGLKKICSS FDGSCMGQVC 360 MSITDVASYI IDPHLWGFRE ACVEHHLQQG QGVAGRAFSS HSMCFCPNIT QFCKTDYPLV 420 HYALMFGLTS CFAICLRSSH TGDDDYVLEF FLPPRITHFS EQKTLVGSIL ATMKQHFQSL 480 KIAAGVELED GGSVEIIEAT NERVTLRLES IPIAQSVQSP PGPGGSPNMV EEVPKDPSEQ 540 QTMMNCNDMN EGGAHGDNAG GNIDQMSSLE TKTMKKPSER KRGKTEKSIS LEVLQRYFAG 600 SLKDAAKSLG VCPTTMKRIC RQHGISRWPS RKINKVNRSL SKLKRVIESV QGAEGAFGLN 660 SLSTSPLPVV GSFPEPSTPN KFSQQASMRP LESQMKENEI DASKILEIED PLLGGMTQNL 720 EKVFNDKGPR RIRTGSGSSE DSTNPTSHGS CYGSPPIESS HVKDISITSN NERCVVPRGS 780 PESSPLQPIN TLNSPSPIPI PDIVLTELQE PFGGMLIEDA GSSKDLRNLC PSAAEAILED 840 QVPEACPTNN PPGCSSLAPK RPVDTLGKTV TPFAAKKEMK TVTIKATYRE DIIRFRVSLT 900 CGIVELKEEV SKRLKLEVGT FDIKYLDDDQ EWVLIACDAD LQECIDVSRS SASHIIRVLV 960 HDITSNLGSS CESSGE |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269|PubMed:18826430}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00449 | DAP | Transfer from AT4G24020 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v1999250.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027363207.1 | 0.0 | protein NLP6-like isoform X1 | ||||
Swissprot | Q84TH9 | 0.0 | NLP7_ARATH; Protein NLP7 | ||||
TrEMBL | A0A2Z5V8A6 | 0.0 | A0A2Z5V8A6_LOTJA; Nodule inception-like protein | ||||
STRING | GLYMA20G29960.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4257 | 34 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 0.0 | NIN like protein 7 |