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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v1950890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | Trihelix | ||||||||
Protein Properties | Length: 449aa MW: 51040.9 Da PI: 6.8791 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 84.4 | 1.5e-26 | 120 | 215 | 1 | 83 |
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt+++v++Li+a+++m+e++ ++ +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ ++ Lj5g3v1950890.1 120 KWTDKMVRLLITAVSYMGEDITSEGgggggrrkftvlQKKGKWKSVSKVMAERGYRVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPAL 213 7********************9864466777888999**********************************************56898888877 PP trihelix 82 fd 83 +d Lj5g3v1950890.1 214 LD 215 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 8.1E-24 | 118 | 244 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MEGNLSQGGI IQGGSSFGGF DLPGSIQVHH HQGQHPHAMQ QHQTHPCQGS TVHVHDGFPR 60 TMGTLQSSCD PTLSMSDFGK GERGKNSTSE EDEPSFNEDG VDGHHEGVRG KKGSPWQRVK 120 WTDKMVRLLI TAVSYMGEDI TSEGGGGGGR RKFTVLQKKG KWKSVSKVMA ERGYRVSPQQ 180 CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PALLDVIEFL SEKEKDDVRK ILSSKHLFYE 240 EMCSYHNGNR LHLPHDPALQ RSLQIALRNR DDHDNDDIRR FHHDGHDEDE QDVEMDDHDD 300 FKENCSSHGD SRGMYGPLGG SMKKLKQVQV QEDANTFGNS VNGQGYNKSS HPHGQVVHSD 360 VNQVLPEGMR AAWLQKQWVE SRSLQLEEQK VQLQVEMLEL EKQRLKWQRF SKKKDRELEK 420 LSLENERMKL ENERIALELK RKEMGAGLN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v1950890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003536428.1 | 0.0 | uncharacterized protein LOC100812134 | ||||
Refseq | XP_028184280.1 | 0.0 | uncharacterized protein LOC114371077 | ||||
TrEMBL | A0A445IRA2 | 0.0 | A0A445IRA2_GLYSO; Uncharacterized protein | ||||
TrEMBL | I1LDG7 | 0.0 | I1LDG7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G36980.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5001 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 1e-144 | sequence-specific DNA binding transcription factors |