PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj5g3v1950880.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Trihelix

Protein Properties

Length: 449aa MW: 51040.9 Da PI: 6.8791

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v1950880.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.4	1.5e-26	120	215	1	83
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt+++v++Li+a+++m+e++ ++ +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ ++ Lj5g3v1950880.1 120 KWTDKMVRLLITAVSYMGEDITSEGgggggrrkftvlQKKGKWKSVSKVMAERGYRVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPAL 213 7******************9864466777888999********************************************56898888877 PP trihelix 82 fd 83 +d Lj5g3v1950880.1 214 LD 215 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.1E-24	118	244	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MEGNLSQGGI IQGGSSFGGF DLPGSIQVHH HQGQHPHAMQ QHQTHPCQGS TVHVHDGFPR 60 TMGTLQSSCD PTLSMSDFGK GERGKNSTSE EDEPSFNEDG VDGHHEGVRG KKGSPWQRVK 120 WTDKMVRLLI TAVSYMGEDI TSEGGGGGGR RKFTVLQKKG KWKSVSKVMA ERGYRVSPQQ 180 CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PALLDVIEFL SEKEKDDVRK ILSSKHLFYE 240 EMCSYHNGNR LHLPHDPALQ RSLQIALRNR DDHDNDDIRR FHHDGHDEDE QDVEMDDHDD 300 FKENCSSHGD SRGMYGPLGG SMKKLKQVQV QEDANTFGNS VNGQGYNKSS HPHGQVVHSD 360 VNQVLPEGMR AAWLQKQWVE SRSLQLEEQK VQLQVEMLEL EKQRLKWQRF SKKKDRELEK 420 LSLENERMKL ENERIALELK RKEMGAGLN

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MEGNLSQGGI IQGGSSFGGF DLPGSIQVHH HQGQHPHAMQ QHQTHPCQGS TVHVHDGFPR  60
TMGTLQSSCD PTLSMSDFGK GERGKNSTSE EDEPSFNEDG VDGHHEGVRG KKGSPWQRVK  120
WTDKMVRLLI TAVSYMGEDI TSEGGGGGGR RKFTVLQKKG KWKSVSKVMA ERGYRVSPQQ  180
CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PALLDVIEFL SEKEKDDVRK ILSSKHLFYE  240
EMCSYHNGNR LHLPHDPALQ RSLQIALRNR DDHDNDDIRR FHHDGHDEDE QDVEMDDHDD  300
FKENCSSHGD SRGMYGPLGG SMKKLKQVQV QEDANTFGNS VNGQGYNKSS HPHGQVVHSD  360
VNQVLPEGMR AAWLQKQWVE SRSLQLEEQK VQLQVEMLEL EKQRLKWQRF SKKKDRELEK  420
LSLENERMKL ENERIALELK RKEMGAGLN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v1950880.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003536428.1	0.0	uncharacterized protein LOC100812134
Refseq	XP_028184280.1	0.0	uncharacterized protein LOC114371077
TrEMBL	A0A445IRA2	0.0	A0A445IRA2_GLYSO; Uncharacterized protein
TrEMBL	I1LDG7	0.0	I1LDG7_SOYBN; Uncharacterized protein
STRING	GLYMA10G36980.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5001	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-144	sequence-specific DNA binding transcription factors