PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1949840.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Trihelix
Protein Properties Length: 638aa    MW: 72081.5 Da    PI: 7.6704
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1949840.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.15.5e-2957140186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW++qe+laL+++r++m+  +r+++lk+plWeevs+k++  g++rs+k+Ckek+en+ k++k++ke+++ +  ++ +t+++fdql+
  Lj5g3v1949840.2  57 RWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVSRKLAGLGYHRSAKKCKEKFENVYKYHKRTKESRSAK--PEGKTYRFFDQLQ 140
                      8********************************************************************95..55568******98 PP
2trihelix104.11e-32456541187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k ev+aLi++r+++e +++++  k+plWee+s++m++ g++r++k+Ckekwen+nk++kk+ke++k+r  e+s+tcpyf++lea
  Lj5g3v1949840.2 456 RWPKAEVHALIKIRTSLEAKYQENGPKAPLWEEISAAMQRIGYNRKAKRCKEKWENINKYFKKVKESNKQR-REDSKTCPYFHELEA 541
                      8*********************************************************************8.78999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.01454116IPR001005SANT/Myb domain
PROSITE profilePS500906.92256114IPR017877Myb-like domain
PfamPF138374.0E-1956142No hitNo description
CDDcd122031.01E-2156121No hitNo description
PROSITE profilePS500907.039449513IPR017877Myb-like domain
SMARTSM007171.3453515IPR001005SANT/Myb domain
CDDcd122033.75E-25455520No hitNo description
PfamPF138374.3E-22455542No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MMQLGEQESV LDTSMPLPLP LPPQDGANGG EEKGREGSGG GELDEDGGDK IGSGGSRWPR  60
QETLALLKIR SDMDAVFRDS SLKGPLWEEV SRKLAGLGYH RSAKKCKEKF ENVYKYHKRT  120
KESRSAKPEG KTYRFFDQLQ ALEKQFSLSY PPQPQLQPQP PTPQPSLPTR PSDGTTVSHV  180
TTTVPSTNLP PTIISPPQPP TNAVTTTTNA ATTTTITCPT VVANPRNTSQ AATAAATTPT  240
NNNNVPYSLP NMNLFSSSNS TSSSTASDED LEEKYRKKRK WKDYFRRLTR QVLSKQEEMQ  300
KRFLEAIDKR EREQIAQQEA WRAQEMARIN REHDLLVQER STAAAKNAAV IAFLQKLSGQ  360
QSPITQPAGA NFLPQTPQPQ SQPQQSQQLP QLHLQLQPQQ QQPQPLVLPP PVSKPQPPQQ  420
PHQQQLVPHP LASNNNMEIQ SMSNGHNNGT PLSSSRWPKA EVHALIKIRT SLEAKYQENG  480
PKAPLWEEIS AAMQRIGYNR KAKRCKEKWE NINKYFKKVK ESNKQRREDS KTCPYFHELE  540
ALYKEKSKTQ NLFGASIHNM RTNEMMEPLM VQPEQQWRPP PQYEESVKKN DETKEREQEE  600
EEEDYDEEEG EGDSMQEDGG GNRYEIVTNK LSSVDTVE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.128970.0floral bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1949840.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1495341e-74BT149534.1 Medicago truncatula clone JCVI-FLMt-19J11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019442068.10.0PREDICTED: trihelix transcription factor GT-2-like
TrEMBLA0A371F1F50.0A0A371F1F5_MUCPR; Trihelix transcription factor GT-2
STRINGGLYMA20G30650.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-51Trihelix family protein