PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Expression |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Lj5g3v1949840.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Trihelix

Protein Properties

Length: 638aa MW: 72081.5 Da PI: 7.6704

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v1949840.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.1	5.5e-29	57	140	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m+ +r+++lk+plWeevs+k++ g++rs+k+Ckek+en+ k++k++ke+++ + ++ +t+++fdql+ Lj5g3v1949840.1 57 RWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVSRKLAGLGYHRSAKKCKEKFENVYKYHKRTKESRSAK--PEGKTYRFFDQLQ 140 8******************************************************************95..55568****98 PP
2	trihelix	104.1	1e-32	456	541	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+++e +++++ k+plWee+s++m++ g++r++k+Ckekwen+nk++kk+ke++k+r e+s+tcpyf++lea Lj5g3v1949840.1 456 RWPKAEVHALIKIRTSLEAKYQENGPKAPLWEEISAAMQRIGYNRKAKRCKEKWENINKYFKKVKESNKQR-REDSKTCPYFHELEA 541 8*******************************************************************8.78999******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.014	54	116	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.922	56	114	IPR017877	Myb-like domain
Pfam	PF13837	4.0E-19	56	142	No hit	No description
CDD	cd12203	1.01E-21	56	121	No hit	No description
PROSITE profile	PS50090	7.039	449	513	IPR017877	Myb-like domain
SMART	SM00717	1.3	453	515	IPR001005	SANT/Myb domain
CDD	cd12203	3.75E-25	455	520	No hit	No description
Pfam	PF13837	4.3E-22	455	542	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 638 aa Download sequence Send to blast
MMQLGEQESV LDTSMPLPLP LPPQDGANGG EEKGREGSGG GELDEDGGDK IGSGGSRWPR 60 QETLALLKIR SDMDAVFRDS SLKGPLWEEV SRKLAGLGYH RSAKKCKEKF ENVYKYHKRT 120 KESRSAKPEG KTYRFFDQLQ ALEKQFSLSY PPQPQLQPQP PTPQPSLPTR PSDGTTVSHV 180 TTTVPSTNLP PTIISPPQPP TNAVTTTTNA ATTTTITCPT VVANPRNTSQ AATAAATTPT 240 NNNNVPYSLP NMNLFSSSNS TSSSTASDED LEEKYRKKRK WKDYFRRLTR QVLSKQEEMQ 300 KRFLEAIDKR EREQIAQQEA WRAQEMARIN REHDLLVQER STAAAKNAAV IAFLQKLSGQ 360 QSPITQPAGA NFLPQTPQPQ SQPQQSQQLP QLHLQLQPQQ QQPQPLVLPP PVSKPQPPQQ 420 PHQQQLVPHP LASNNNMEIQ SMSNGHNNGT PLSSSRWPKA EVHALIKIRT SLEAKYQENG 480 PKAPLWEEIS AAMQRIGYNR KAKRCKEKWE NINKYFKKVK ESNKQRREDS KTCPYFHELE 540 ALYKEKSKTQ NLFGASIHNM RTNEMMEPLM VQPEQQWRPP PQYEESVKKN DETKEREQEE 600 EEEDYDEEEG EGDSMQEDGG GNRYEIVTNK LSSVDTVE

Sequence ? help Back to Top

Protein Sequence Length: 638 aa Download sequence Send to blast

MMQLGEQESV LDTSMPLPLP LPPQDGANGG EEKGREGSGG GELDEDGGDK IGSGGSRWPR  60
QETLALLKIR SDMDAVFRDS SLKGPLWEEV SRKLAGLGYH RSAKKCKEKF ENVYKYHKRT  120
KESRSAKPEG KTYRFFDQLQ ALEKQFSLSY PPQPQLQPQP PTPQPSLPTR PSDGTTVSHV  180
TTTVPSTNLP PTIISPPQPP TNAVTTTTNA ATTTTITCPT VVANPRNTSQ AATAAATTPT  240
NNNNVPYSLP NMNLFSSSNS TSSSTASDED LEEKYRKKRK WKDYFRRLTR QVLSKQEEMQ  300
KRFLEAIDKR EREQIAQQEA WRAQEMARIN REHDLLVQER STAAAKNAAV IAFLQKLSGQ  360
QSPITQPAGA NFLPQTPQPQ SQPQQSQQLP QLHLQLQPQQ QQPQPLVLPP PVSKPQPPQQ  420
PHQQQLVPHP LASNNNMEIQ SMSNGHNNGT PLSSSRWPKA EVHALIKIRT SLEAKYQENG  480
PKAPLWEEIS AAMQRIGYNR KAKRCKEKWE NINKYFKKVK ESNKQRREDS KTCPYFHELE  540
ALYKEKSKTQ NLFGASIHNM RTNEMMEPLM VQPEQQWRPP PQYEESVKKN DETKEREQEE  600
EEEDYDEEEG EGDSMQEDGG GNRYEIVTNK LSSVDTVE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.12897	0.0	floral bud

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v1949840.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT149534	1e-74	BT149534.1 Medicago truncatula clone JCVI-FLMt-19J11 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019442068.1	0.0	PREDICTED: trihelix transcription factor GT-2-like
TrEMBL	A0A371F1F5	0.0	A0A371F1F5_MUCPR; Trihelix transcription factor GT-2
STRING	GLYMA20G30650.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF373	34	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	3e-51	Trihelix family protein