PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1839400.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 1407aa    MW: 152343 Da    PI: 6.4067
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1839400.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.5e-09798839346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT eE e++++ ++ lG++ +++Ia+ +  ++t  +c+++++k
  Lj5g3v1839400.2 798 PWTSEEREIFLEKFAALGKD-FRKIASFLD-HKTTADCVEFYYK 839
                      8*****************99.*********.***********98 PP
2Myb_DNA-binding31.73.5e-1010141055346
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46  
                        WT +E   l++av  +G++ +++Iar++g +++ +qck ++ k
  Lj5g3v1839400.2 1014 DWTDDEKAALLQAVSSFGKD-FAKIARCVG-TKSQEQCKVFFTK 1055
                       5*****************99.*********.********88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.29E-13782842IPR009057Homeodomain-like
PROSITE profilePS5129315.635794845IPR017884SANT domain
SMARTSM007179.9E-9795843IPR001005SANT/Myb domain
PfamPF002491.9E-6797839IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-5798839IPR009057Homeodomain-like
SuperFamilySSF466892.99E-1010101061IPR009057Homeodomain-like
PROSITE profilePS5129314.06710101061IPR017884SANT domain
SMARTSM007174.0E-910111059IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-710141055IPR009057Homeodomain-like
PfamPF002491.2E-810141055IPR001005SANT/Myb domain
CDDcd001677.51E-810151055No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1407 aa     Download sequence    Send to blast
MPPEPLPWDR KDFFKERKHE RSESVGSVAR WRDSSHHRDF HRWGSAEFRR PPGHGKQGGW  60
HLFSEESGHG YAGSRSGDKM VEEDSRPSIS RGDGKYGRSG SRENRGSSGP RDWRGHSWEN  120
SNGSQNFSRR PPDVNNDQRS VDDTLAHSSH PHSDFANNSW DQHHLKDQND KMGGFNGTGT  180
GPRCDRENSL GAADWKPLKW TRSGSLSSRA SGFSHTSSSR SMGGADSYEV KAELQPKNAT  240
ASKSHSGEAA TARVTSSAPS EDTTSRKKPR LGWGEGLAKY EKKKVEGPEL SVNKDGPVSS  300
TSNMEPCNVF SPNLVDKSPK LTGFSDCASP ATPSSVACSS SPGVDDKLFS KSANVDSDFS  360
NLTGSPAPGS QNHLQKFSFN LHNLDIYSLN NLGSSIVDLV QSDDPSSVDS GLGRSSAINK  420
LLIWKADISK VLEMTETEID SLENELKSLK SEPGDKCPPA PGSQVVGNNE IFCEDLAGVN  480
KVTRPVPLKI VSSDEPDVEK MPQSNNLHSI HENANEEGID SPGTATSKFV EPLPLIKAVS  540
SCEARGYDNF SADLNARQSA AVKSLVPCTT RRNASVSACG DSNTSMEVKV SLDASSGASL  600
SYSSEDIYNT IISSNKEIAD RAHDAFAKLL PKECCKIDNV GANNGSCTGG LIVEKIAEKK  660
QFARFKERVI ALKFKALHHV WKEDMRLLSM KKCRQKSHKK NELSVRTTYN GNQKNRSSIR  720
SRFTSPAGNH LSMVPTSEII NFTSTLLSES QVKAQRNALK MPALILDEKE KLISKFISSN  780
GLVEDPLAVE KEKAMINPWT SEEREIFLEK FAALGKDFRK IASFLDHKTT ADCVEFYYKN  840
HKSDCFVKLK KEGLCKLGKS FSAKTSLVAS GKKWNREVNA ASLEILSAAS VMADGMSGNK  900
KMRSRSFLLG GYGNVKKSKG EDSFIDRSSS FDIHGDERET AAAADVLAGI CGSLSSEAMS  960
SCITSSVDPV DGNTDRKFLK ANPLCRKPLT PDVTQNVEDE TCSDQSSDEM DLSDWTDDEK  1020
AALLQAVSSF GKDFAKIARC VGTKSQEQCK VFFTKARKCL RLDLMHPIPG NGRSLGNDDA  1080
NGGGSDTDDA CVVETGSAVG TDKSGTKTDE DLPSMNAFHD ESNPVEPRNL SAELNESKEN  1140
NLTAVDLEDI NLISDACAIK VESKLGSDDD SEVVLASPDK SASVSERAAM IMSGSIEGGK  1200
ERANKLGGAE LISAPEVVEL RECNSVPADR LTSEVSLGGL GNKLKTQRVL SPHCFDDRDD  1260
KHEANTGVVE LKSSVQDSST SLNVSLSSVG SSYSGLCFDS ENKHVFVGKP PISALSLKEF  1320
HPTANSLLQN AAADVQSEKA ASQVQLSSTS DIQGIRDMHC HNPISNGDHQ LPLPGNHLMA  1380
SILQGYPLQV PIKKEVNVNM NCSGSED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C5e-17754846293NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D5e-17754846293NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1690696KKCRQKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1839400.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027367112.10.0uncharacterized protein LOC113873262 isoform X1
TrEMBLA0A371EYZ90.0A0A371EYZ9_MUCPR; Nuclear receptor corepressor 1 (Fragment)
STRINGGLYMA20G31871.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49863352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-162MYB family protein