PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj5g3v1839400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 1406aa MW: 152272 Da PI: 6.4067 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.2 | 4.5e-09 | 797 | 838 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e++++ ++ lG++ +++Ia+ + ++t +c+++++k Lj5g3v1839400.1 797 PWTSEEREIFLEKFAALGKD-FRKIASFLD-HKTTADCVEFYYK 838 8*****************99.*********.***********98 PP | |||||||
2 | Myb_DNA-binding | 31.7 | 3.5e-10 | 1013 | 1054 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT +E l++av +G++ +++Iar++g +++ +qck ++ k Lj5g3v1839400.1 1013 DWTDDEKAALLQAVSSFGKD-FAKIARCVG-TKSQEQCKVFFTK 1054 5*****************99.*********.********88766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.35E-13 | 781 | 841 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 15.635 | 793 | 844 | IPR017884 | SANT domain |
SMART | SM00717 | 9.9E-9 | 794 | 842 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-6 | 796 | 838 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-5 | 797 | 838 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 14.067 | 1009 | 1060 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 2.99E-10 | 1009 | 1060 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-9 | 1010 | 1058 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-8 | 1013 | 1054 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-7 | 1013 | 1054 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.51E-8 | 1014 | 1054 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1406 aa Download sequence Send to blast |
MPPEPLPWDR KDFFKERKHE RSESVGSVAR WRDSSHHRDF HRWGSAEFRR PPGHGKQGGW 60 HLFSEESGHG YAGSRSGDKM VEEDSRPSIS RGDGKYGRSG SRENRGSSGP RDWRGHSWEN 120 SNGSQNFSRR PPDVNNDQRS VDDTLAHSSH PHSDFANNSW DQHHLKDQND KMGGFNGTGT 180 GPRCDRENSL GAADWKPLKW TRSGSLSSRA SGFSHTSSSR SMGGADSYEV KAELQPKNAT 240 ASKSHSGEAA TARVTSSAPS EDTTSRKKPR LGWGEGLAKY EKKKVEGPEL SVNKDGPVSS 300 TSNMEPCNVF SPNLVDKSPK LTGFSDCASP ATPSSVACSS SPGVDDKLFS KSANVDSDFS 360 NLTGSPAPGS QNHLQKFSFN LHNLDIYSLN NLGSSIVDLV QSDDPSSVDS GLGRSSAINK 420 LLIWKADISK VLEMTETEID SLENELKSLK SEPGDKCPPA PGSQVVGNNE IFCEDLAGVN 480 KVTRPVPLKI VSSDEPDVEK MPQSNNLHSI HENANEEGID SPGTATSKFV EPLPLIKAVS 540 SCEARGYDNF SADLNARQSA AVKSLVPCTT RRNASVSACG DSNTSMEVKV SLDASSGASL 600 SYSSEDIYNT IISSNKEIAD RAHDAFAKLL PKECCKIDNV GANNGSCTGG LIVEKIAEKK 660 QFARFKERVI ALKFKALHHV WKEDMRLLSM KKCRQKSHKK NELSVRTTYN GNQKNRSSIR 720 SRFTSPGNHL SMVPTSEIIN FTSTLLSESQ VKAQRNALKM PALILDEKEK LISKFISSNG 780 LVEDPLAVEK EKAMINPWTS EEREIFLEKF AALGKDFRKI ASFLDHKTTA DCVEFYYKNH 840 KSDCFVKLKK EGLCKLGKSF SAKTSLVASG KKWNREVNAA SLEILSAASV MADGMSGNKK 900 MRSRSFLLGG YGNVKKSKGE DSFIDRSSSF DIHGDERETA AAADVLAGIC GSLSSEAMSS 960 CITSSVDPVD GNTDRKFLKA NPLCRKPLTP DVTQNVEDET CSDQSSDEMD LSDWTDDEKA 1020 ALLQAVSSFG KDFAKIARCV GTKSQEQCKV FFTKARKCLR LDLMHPIPGN GRSLGNDDAN 1080 GGGSDTDDAC VVETGSAVGT DKSGTKTDED LPSMNAFHDE SNPVEPRNLS AELNESKENN 1140 LTAVDLEDIN LISDACAIKV ESKLGSDDDS EVVLASPDKS ASVSERAAMI MSGSIEGGKE 1200 RANKLGGAEL ISAPEVVELR ECNSVPADRL TSEVSLGGLG NKLKTQRVLS PHCFDDRDDK 1260 HEANTGVVEL KSSVQDSSTS LNVSLSSVGS SYSGLCFDSE NKHVFVGKPP ISALSLKEFH 1320 PTANSLLQNA AADVQSEKAA SQVQLSSTSD IQGIRDMHCH NPISNGDHQL PLPGNHLMAS 1380 ILQGYPLQVP IKKEVNVNMN CSGSED |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 5e-17 | 753 | 845 | 2 | 93 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 5e-17 | 753 | 845 | 2 | 93 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 690 | 696 | KKCRQKS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj5g3v1839400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027367113.1 | 0.0 | uncharacterized protein LOC113873262 isoform X2 | ||||
TrEMBL | A0A371EYZ9 | 0.0 | A0A371EYZ9_MUCPR; Nuclear receptor corepressor 1 (Fragment) | ||||
STRING | GLYMA20G31871.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G52250.1 | 1e-161 | MYB family protein |