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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Lj5g3v1812820.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family |
ARF |
Protein Properties |
Length: 613aa MW: 68110.6 Da PI: 7.4235 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Lj5g3v1812820.1 | genome | Kazusa | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 73.4 | 2.8e-23 | 123 | 224 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g+ W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF +
Lj5g3v1812820.1 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKRLVAGDSIVFL--RA 212
89****************************986445444..8************************************************..44 PP
SEE..EEEEE-S CS
B3 88 sefelvvkvfrk 99
+++ l+v+++r+
Lj5g3v1812820.1 213 ENGDLCVGIRRA 224
88999****997 PP
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2 | Auxin_resp | 114.1 | 1.3e-37 | 280 | 363 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83
a+++a ++ +FevvY+Prast+eF+vk+++v+++++++++ GmRfkm fetedss++++ +Gt+++vs +dp+rWp+S+Wr+L+
Lj5g3v1812820.1 280 AVSSAVNGRPFEVVYYPRASTPEFCVKASSVKASMQIQWCSGMRFKMPFETEDSSRISWfMGTISSVSVADPIRWPDSPWRLLQ 363
56788999**************************************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 613 aa
Download sequence Send
to blast |
MFVVMDSMER TTERCLDSQL WHACAGAMVQ MPPLNTKVFY FPQGHAEHAH GGGKINFGQH 60 RVPPLIPCRV SAMKYMADPD TDEVFVKMRL TPLREHELDL EENDCSNFLG GNNNSEEKVP 120 SSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTIIAKDMHG QCWKFRHIYR 180 GTPRRHLLTT GWSNFVNHKR LVAGDSIVFL RAENGDLCVG IRRAKKGIGG GTELFSSGWN 240 NNQVAPTMFG SGFLCKSENN RKNGDEFFMG RVTGESVVEA VSSAVNGRPF EVVYYPRAST 300 PEFCVKASSV KASMQIQWCS GMRFKMPFET EDSSRISWFM GTISSVSVAD PIRWPDSPWR 360 LLQVVWDEPD LLQNVKSVNP WLVELVSNMP TFNLSPFSPP RKKQRLIQDP YFHLINQLPV 420 PSSLSNNLLS YTNSLCNMKD NNYSSAGIQG ARHVQCGPTP SSDFPFKILQ PDFSRFDHET 480 QPIRPHCGNG NSYKSSTKTN VDISCLLTVG NHGQSFKESN EVKAPHILLF GKIIHTEQKS 540 SNSLNSSAST NGNSLSEGSN SMKTSSNASH DLGFALHQNS PIENSSDGGS HWYKDQHNSD 600 LGTENVTSLC VAL
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |