PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1793480.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 573aa    MW: 63173.2 Da    PI: 9.5415
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1793480.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-057294123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C+ C+k F r  nL+ H r H
  Lj5g3v1793480.2 72 FICEVCNKGFQREQNLQLHRRGH 94
                     89*******************88 PP
2zf-C2H212.50.00044148170123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k +  +s+ k H +t+
  Lj5g3v1793480.2 148 WKCEKCSKKYAVQSDWKAHSKTC 170
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.4E-67194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.7E-77194No hitNo description
SMARTSM003550.00527294IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.997294IPR007087Zinc finger, C2H2
PfamPF121712.8E-57294IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM00355130113143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.4E-5136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.7E-7143168No hitNo description
SMARTSM00355140148168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MAAASSSSSP FFGIREENSS QITHLHQSPT AASSAALTTM PQKKRRNQPG TPSPDAEVIA  60
LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL KQKSNKEPRR KVYLCPEPTC  120
VHHDPSRALG DLTGIKKHYS RKHGEKKWKC EKCSKKYAVQ SDWKAHSKTC GTREYRCDCG  180
TLFSRRDSFI THRAFCDALA QESARLPNGL TPLGTNLYGT PTNHMTLGLS QIGTQISQQL  240
QNHNQNATNN NTLRLTGAAK FEHLIPSLNQ SSSFGVQHSP QQSIPSSAFF MTEPNQTFDQ  300
EPHQGPFSNK NLNGLMQLPD LQGNNNTNSN SPSNLFNLSF FPNSTMMDQF NNHQGTTSLY  360
MNNNNNNPII SDHHQVGNSG LSSSLFGNSL QHENMSSPHM SATALLQKAA QMGSTATTTK  420
GAGGSSILIR GMSTSSSTYN NNDSRSDTER DLVSDNNIAT FGSDQRRGEG VNVIMRTNME  480
NDRRNLHGLM INSITNGNNT SIFGNMQGNE KLPQNLDLSF GGSDKLTLDF LGVGGMMRNI  540
NSGGEHQQQR VMDPHDLKSA QSTQLHFGSS TMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35144206365Zinc finger protein JACKDAW
5b3h_F2e-35144206365Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.64920.0pod| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1793480.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0064230.0AP006423.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT23C14, TM0311, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027366526.10.0protein indeterminate-domain 5, chloroplastic-like isoform X1
RefseqXP_027366527.10.0protein indeterminate-domain 5, chloroplastic-like isoform X1
RefseqXP_027366529.10.0protein indeterminate-domain 5, chloroplastic-like isoform X1
RefseqXP_027366530.10.0protein indeterminate-domain 5, chloroplastic-like isoform X1
RefseqXP_027366531.10.0protein indeterminate-domain 5, chloroplastic-like isoform X1
RefseqXP_027366532.10.0protein indeterminate-domain 5, chloroplastic-like isoform X1
RefseqXP_027366533.10.0protein indeterminate-domain 5, chloroplastic-like isoform X1
RefseqXP_027366534.10.0protein indeterminate-domain 5, chloroplastic-like isoform X1
RefseqXP_027366535.10.0protein indeterminate-domain 5, chloroplastic-like isoform X1
TrEMBLA0A394DE880.0A0A394DE88_LUPAN; Uncharacterized protein
STRINGGLYMA20G32480.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-102indeterminate(ID)-domain 5