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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v1793480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C2H2 | ||||||||
Protein Properties | Length: 573aa MW: 63173.2 Da PI: 9.5415 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 2.9e-05 | 72 | 94 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Lj5g3v1793480.1 72 FICEVCNKGFQREQNLQLHRRGH 94 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.5 | 0.00044 | 148 | 170 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Lj5g3v1793480.1 148 WKCEKCSKKYAVQSDWKAHSKTC 170 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.4E-6 | 71 | 94 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.7E-7 | 71 | 94 | No hit | No description |
SMART | SM00355 | 0.0052 | 72 | 94 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.99 | 72 | 94 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 2.8E-5 | 72 | 94 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 74 | 94 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 113 | 143 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.4E-5 | 136 | 169 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.7E-7 | 143 | 168 | No hit | No description |
SMART | SM00355 | 140 | 148 | 168 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MAAASSSSSP FFGIREENSS QITHLHQSPT AASSAALTTM PQKKRRNQPG TPSPDAEVIA 60 LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL KQKSNKEPRR KVYLCPEPTC 120 VHHDPSRALG DLTGIKKHYS RKHGEKKWKC EKCSKKYAVQ SDWKAHSKTC GTREYRCDCG 180 TLFSRRDSFI THRAFCDALA QESARLPNGL TPLGTNLYGT PTNHMTLGLS QIGTQISQQL 240 QNHNQNATNN NTLRLTGAAK FEHLIPSLNQ SSSFGVQHSP QQSIPSSAFF MTEPNQTFDQ 300 EPHQGPFSNK NLNGLMQLPD LQGNNNTNSN SPSNLFNLSF FPNSTMMDQF NNHQGTTSLY 360 MNNNNNNPII SDHHQVGNSG LSSSLFGNSL QHENMSSPHM SATALLQKAA QMGSTATTTK 420 GAGGSSILIR GMSTSSSTYN NNDSRSDTER DLVSDNNIAT FGSDQRRGEG VNVIMRTNME 480 NDRRNLHGLM INSITNGNNT SIFGNMQGNE KLPQNLDLSF GGSDKLTLDF LGVGGMMRNI 540 NSGGEHQQQR VMDPHDLKSA QSTQLHFGSS TMQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-35 | 144 | 206 | 3 | 65 | Zinc finger protein JACKDAW |
5b3h_F | 2e-35 | 144 | 206 | 3 | 65 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.6492 | 0.0 | pod| root |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00256 | DAP | Transfer from AT2G02080 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v1793480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006423 | 0.0 | AP006423.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT23C14, TM0311, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027366526.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like isoform X1 | ||||
Refseq | XP_027366527.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like isoform X1 | ||||
Refseq | XP_027366529.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like isoform X1 | ||||
Refseq | XP_027366530.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like isoform X1 | ||||
Refseq | XP_027366531.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like isoform X1 | ||||
Refseq | XP_027366532.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like isoform X1 | ||||
Refseq | XP_027366533.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like isoform X1 | ||||
Refseq | XP_027366534.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like isoform X1 | ||||
Refseq | XP_027366535.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like isoform X1 | ||||
TrEMBL | A0A394DE88 | 0.0 | A0A394DE88_LUPAN; Uncharacterized protein | ||||
STRING | GLYMA20G32480.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1536 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-102 | indeterminate(ID)-domain 5 |