PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1793440.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 366aa    MW: 40746.4 Da    PI: 8.6413
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1793440.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.000172663001655
                      HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + +++  L++++ +      +K + a++L +A+ YIk Lq
  Lj5g3v1793440.2 266 LADKITALQQIVSPF-----GKTDTASVLFEAIGYIKFLQ 300
                      678999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.048250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-8265307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-9265315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.71E-5265304No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MASAMFEPAC DYLKKLDTSW DYSGSTSFNS FEKHLNGFSE ALIENNERLT KLSNLVSTWS  60
IAPPEPEVSS HQLDPQTNNM SLNSSMDHHH YPQPFGDSSS CSIEGVNSKD SSGMFPFYDQ  120
EMKVKQEYHH ASEAVLGKSF NANGYQNGLN SLSVGDNSGK FYHGFPNLSP CTRNSSDVIS  180
FNNRLGRPVN VGIHAQRPNM KYSNLSESKK QGLQTPSQMR TNNGRGEGTI REVKKKRSEE  240
SSEAISKKPK QDTSTASSSK APKVKLADKI TALQQIVSPF GKTDTASVLF EAIGYIKFLQ  300
EQVQLLSNPY LKTNLHKDPR GSFDRKDKED AKLDLRSKGL CLVPTSCTPV VYRENTGPDY  360
WTPAYR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.75441e-80root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1793440.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0064230.0AP006423.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT23C14, TM0311, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027367477.10.0transcription factor bHLH111
TrEMBLA0A1S3V3710.0A0A1S3V371_VIGRR; transcription factor bHLH111 isoform X2
STRINGXP_007143772.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.16e-46bHLH family protein