PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1793370.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Trihelix
Protein Properties Length: 371aa    MW: 41961.8 Da    PI: 9.8232
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1793370.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.13.6e-1656174285
         trihelix   2 WtkqevlaLiearremeerlrrgk..................................lkkplWeevskkmrergferspkqCkekwenlnkry 61 
                      Wt qe+l Li+a++ ++er  +++                                  + + +W++v ++++++g+ rs++qC++kw+nl ++y
  Lj5g3v1793370.1  56 WTIQETLILITAKKLDDERRLKASsppppptttttphdpsttprpspaacsaasssrtSGELRWKWVENYCWSHGCLRSQNQCNDKWDNLLRDY 149
                      *************95555554443478888888888888999999999999999999899********************************** PP

         trihelix  62 kkikegekkr.tsessstcpyfdql 85 
                      kk+++ e+k  ++++  ++p +  l
  Lj5g3v1793370.1 150 KKVRDYESKSeSKDHNYNFPSYWTL 174
                      ********98445556666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-55267IPR009057Homeodomain-like
PfamPF138371.9E-955173No hitNo description
Gene3DG3DSA:1.10.10.605.4E-5111147IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MTDPSTTPIP PPPINIPDPH HHHHHNHHLP LLHGTTTAPP LPSSSSAPRD YRKGNWTIQE  60
TLILITAKKL DDERRLKASS PPPPPTTTTT PHDPSTTPRP SPAACSAASS SRTSGELRWK  120
WVENYCWSHG CLRSQNQCND KWDNLLRDYK KVRDYESKSE SKDHNYNFPS YWTLNKQQRK  180
DHNLPSNMVF EIYQAISDVL QRKNSQRFIT TTTPQQQQQQ QPLVTLVTST PPPQHPQPLQ  240
AQPLPPPPPP PPQPPATSIT PAGSEKTESS GSEQSDQEEN NGSESSKRRK VRNIGSSIMR  300
SASVLARALR SCEEKKEKRH REMMELEQRR IQMEENRNEV HRQGLATLVT AVSNLSGAIQ  360
SFINSQRHGQ R
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1793370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0064230.0AP006423.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT23C14, TM0311, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496217.21e-145trihelix transcription factor ASR3-like isoform X1
RefseqXP_013469425.11e-146trihelix transcription factor ASR3
TrEMBLA0A2K3MQ281e-149A0A2K3MQ28_TRIPR; Trihelix transcription factor GTL1-like protein
STRINGXP_004496217.11e-147(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68043242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.12e-42Trihelix family protein