PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1770430.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Trihelix
Protein Properties Length: 512aa    MW: 58193.8 Da    PI: 6.6762
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1770430.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix88.57.7e-28136221187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW++qe+l L+++r+ +++++r+++ k+plW e+s+ m +e g++rs k+Ckek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Lj5g3v1770430.1 136 RWPRQETLSLLDIRSLLDSKFRENNHKAPLWNEISRIMaEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASR--QDGKHYRFFRQLEA 221
                      8*************************************7778*****************************8..55667*******85 PP
2trihelix41.82.9e-13428494266
         trihelix   2 WtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                      W++ e+  Li++r+++e+r+r++    +   W+e+++km+  gfers+ +Ck+ w++++   +++ e
  Lj5g3v1770430.1 428 WSEMEISNLIQLRTSLEQRVRESGylENNVVWDEIAEKMACLGFERSAGECKQVWDEISISLRRTVE 494
                      *********************9854488999***************************998888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.7133196IPR001005SANT/Myb domain
CDDcd122032.08E-22135201No hitNo description
PfamPF138372.6E-19135222No hitNo description
PROSITE profilePS500906.597135194IPR017877Myb-like domain
PROSITE profilePS500906.737420486IPR017877Myb-like domain
SMARTSM007170.7424488IPR001005SANT/Myb domain
PfamPF138371.0E-10427503No hitNo description
CDDcd122031.25E-14428492No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MSDPYGFPED LRRLISARTT TNNTLSEPPP CAYGGGHGGV NAPTPFFPPP HSYDPMMVGD  60
HVFLPRGFTH QYLHHHDYST STVNPTNSST TVAAAASDHA AATATVTTSA LFCSRIDTAA  120
TAADKGWLGF DSGNNRWPRQ ETLSLLDIRS LLDSKFRENN HKAPLWNEIS RIMAEEFGYQ  180
RSGKKCKEKF ENLYKYYKKT KEGKASRQDG KHYRFFRQLE AICGEPNTHH ASTSDKNPLG  240
CIQTPTFTIS QENNNNNGHD FNNLKSSESL SVSNSSEFDT SSSENNDEDL SAIAHMMNKQ  300
KGLHQGQSSH RRNRKSWRAK VEEMVDSHMR KIIETQDAWM EKMLNVVEQR EQEMVSKEEE  360
RKKKESLRFD QQVHQLWAKE KAWVEARDAA LVEVVKKHIG IELEALQPNK NKNQANDYHC  420
EGVEQGSWSE MEISNLIQLR TSLEQRVRES GYLENNVVWD EIAEKMACLG FERSAGECKQ  480
VWDEISISLR RTVEECGGKA RPWCLGLKLT DD
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1770430.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941221e-126BT094122.1 Soybean clone JCVI-FLGm-18O17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143826.10.0hypothetical protein PHAVU_007G104900g
TrEMBLV7BE190.0V7BE19_PHAVU; Uncharacterized protein
STRINGXP_007143826.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.15e-65Trihelix family protein