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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Lj5g3v1665190.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family |
C3H |
Protein Properties |
Length: 476aa MW: 50640.9 Da PI: 8.8904 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Lj5g3v1665190.1 | genome | Kazusa | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 34 | 5.1e-11 | 55 | 80 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+ ++C +++rtG+C yG+rC+++H++
Lj5g3v1665190.1 55 GVANCVYYMRTGFCGYGGRCRYNHPR 80
7899********************96 PP
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2 | zf-CCCH | 39.7 | 8.1e-13 | 101 | 125 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+++C+++++tGtCk+G++C+F+H++
Lj5g3v1665190.1 101 EPPCQYYLKTGTCKFGASCRFHHPK 125
79*********************96 PP
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3 | zf-CCCH | 37.2 | 5.1e-12 | 146 | 171 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++C+++++tG+Ck+G +CkF+H++
Lj5g3v1665190.1 146 GEKECSYYLKTGQCKFGLTCKFHHPQ 171
7899********************97 PP
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4 | zf-CCCH | 35 | 2.4e-11 | 302 | 328 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+++++C++++rtG Ck+G C+++H++
Lj5g3v1665190.1 302 PGEPECQYYLRTGDCKFGLACRYHHPR 328
5799*********************96 PP
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5 | zf-CCCH | 36.9 | 6.1e-12 | 347 | 371 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
+ +C f+++tG+Ck+G+ CkF H+
Lj5g3v1665190.1 347 GVQPCAFYLQTGQCKFGSACKFDHP 371
6789********************9 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 13.075 | 53 | 81 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.3E-6 | 53 | 80 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-8 | 55 | 80 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 56 | 82 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 59 | 80 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.136 | 98 | 126 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.6E-6 | 98 | 125 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-10 | 101 | 125 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.8E-6 | 102 | 126 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-5 | 103 | 125 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.812 | 144 | 172 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-5 | 144 | 171 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-9 | 146 | 171 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.5E-6 | 146 | 172 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-4 | 150 | 170 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.709 | 301 | 329 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-5 | 301 | 328 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.7E-9 | 303 | 328 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-5 | 305 | 330 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.338 | 345 | 373 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-6 | 345 | 372 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 347 | 376 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-9 | 347 | 371 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-5 | 349 | 371 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 476 aa
Download sequence Send
to blast |
MDLYGRSPAA RNGSNPGNQP EWRSPATDTG LEESMWHLTL GGGGGGGEHY PERPGVANCV 60 YYMRTGFCGY GGRCRYNHPR DRAAVAAAVR ATGEYPERAG EPPCQYYLKT GTCKFGASCR 120 FHHPKHGGGY LSQAPLNVYG YPLRPGEKEC SYYLKTGQCK FGLTCKFHHP QPAGTSMPAS 180 APQFYPQVQS PTVPLPEQYG GASTSLRVAR PPMLPGSYVQ GAYGPVLLSP GVVPFPGWSP 240 YSAPVSPVLS PGAQPAVGAT SLYGVTQLSS PTSAFARPYT PLPSSTGPSG SGPNEQVFPE 300 RPGEPECQYY LRTGDCKFGL ACRYHHPRER VMAQPLLSPI GLPFRPGVQP CAFYLQTGQC 360 KFGSACKFDH PLGSMRYSPS TSSLIDVPVA PYPVGSLLSN LAPLTASSEL RPELKSGSKN 420 ESFSTRMPSS GNSSGASVGL IFSQGGSVSL SDVQLSTQSS TPLNSSRSTR QSGDIR
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