PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

C3H

Protein Properties

Length: 137aa MW: 15870.8 Da PI: 8.4859

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v1531170.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.4	1.4e-09	61	84	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++lC +f tG+C+yGd+C+++H+ Lj5g3v1531170.1 61 QPLCFHFVNTGFCRYGDSCNYIHP 84 689********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06220	3.8E-10	4	39	IPR013085	Zinc finger, U1-C type
SuperFamily	SSF57667	2.68E-15	4	58	No hit	No description
SuperFamily	SSF90229	1.57E-7	56	85	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.098	59	86	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.6E-5	59	85	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.5E-7	60	83	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-7	61	84	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MPQRKFYCDY CDKLFQDTPG DRKRHARGIQ HQQAKARWYD SIKQQEFQQQ QQRLLPPHHQ 60 QPLCFHFVNT GFCRYGDSCN YIHPNANNMQ QQPAIISTQG NVVRDSMGMG VSWGNLPPSL 120 QPPPEGGYPP LPFVDWG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v1531170.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT092028	2e-36	BT092028.1 Soybean clone JCVI-FLGm-9K20 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001236361.2	3e-57	putative U1 zinc finger protein
Refseq	XP_028182862.1	3e-57	zinc finger CCCH domain-containing protein 3 isoform X2
Swissprot	Q0JP11	2e-42	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A2K3KEB0	9e-57	A0A2K3KEB0_TRIPR; Zinc finger CCCH domain-containing protein 3-like
STRING	GLYMA10G28540.1	1e-56	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11959	28	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	9e-17	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]