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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v1516750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 148aa MW: 16270.3 Da PI: 9.5473 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.1 | 3.4e-12 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE++ l ++v+++G g Wk I + + R+ ++k++w+++ Lj5g3v1516750.1 5 KQKWTAEEEDALHRGVQKYGAGKWKNILKDPEfapslTSRSNIDLKDKWRNL 56 79************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.117 | 1 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.73E-16 | 2 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-8 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-15 | 5 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.4E-9 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.08E-21 | 6 | 57 | No hit | No description |
PROSITE profile | PS51504 | 11.617 | 115 | 148 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 7.3E-4 | 117 | 146 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MGNQKQKWTA EEEDALHRGV QKYGAGKWKN ILKDPEFAPS LTSRSNIDLK DKWRNLNVGT 60 GQGSNVKSRT LKPKLPAPCA VTTPDPTVQD VAPVQNATPK IPSQNSSEKD HDVKVPPRYN 120 GMIFEALSTI QDANGSDMNA IASFIEVR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v1516750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT143861 | 0.0 | BT143861.1 Lotus japonicus clone JCVI-FLLj-9H22 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019448237.1 | 3e-58 | PREDICTED: telomere repeat-binding factor 4-like | ||||
Swissprot | F4I7L1 | 9e-42 | TRB4_ARATH; Telomere repeat-binding factor 4 | ||||
TrEMBL | I3STR3 | 1e-100 | I3STR3_LOTJA; Uncharacterized protein | ||||
STRING | XP_004486855.1 | 1e-53 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3228 | 29 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17520.1 | 4e-44 | MYB_related family protein |
Publications ? help Back to Top | |||
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