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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v1473470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | NF-YC | ||||||||
Protein Properties | Length: 260aa MW: 28879.8 Da PI: 5.9649 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 175.7 | 4.7e-55 | 79 | 182 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 ql++fw++q i+k++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdf Lj5g3v1473470.1 79 QLQAFWANQyqeIDKVSDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDF 172 89******998999******************************************************************************** PP NF-YC 92 lvdivprdel 101 lvdivpr++l Lj5g3v1473470.1 173 LVDIVPREDL 182 *******987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 7.04E-33 | 59 | 173 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 8.6E-38 | 93 | 165 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-21 | 101 | 164 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MDHQGHGQNP SMGVGGSGPQ MTYGSNPYLQ NPLTGPPGMV VSSAGNVQST GQPVGTQMGH 60 PQLAYQHIHQ QQQQQLQQQL QAFWANQYQE IDKVSDFKNH SLPLARIKKI MKADEDVRMI 120 SAEAPVVFAR ACEMFILELT LRSWNHTEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRE 180 DLKDEVLATM PGGAMPVAGP GDGLPYCYMP PQHAQQVGPG GVMMHKPVMD PNMYAMQPDP 240 FMAPQMWLQP PEQQQSSPDH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-61 | 86 | 179 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 151 | 157 | RRTLQKN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.7664 | 0.0 | cell culture| pod| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11867211, ECO:0000269|PubMed:17322342}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v1473470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT142723 | 0.0 | BT142723.1 Lotus japonicus clone JCVI-FLLj-15C23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015968567.1 | 1e-152 | nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_015968568.1 | 1e-152 | nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_016205500.1 | 1e-152 | nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_020959710.1 | 1e-152 | nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_025603644.1 | 1e-152 | nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_025603645.1 | 1e-152 | nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_025662538.1 | 1e-152 | nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_025662539.1 | 1e-152 | nuclear transcription factor Y subunit C-9 | ||||
Swissprot | Q8L4B2 | 3e-81 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
Swissprot | Q9ZVL3 | 3e-81 | NFYC3_ARATH; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | I3SQH5 | 0.0 | I3SQH5_LOTJA; Uncharacterized protein | ||||
STRING | AES82522 | 1e-150 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1257 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 4e-72 | nuclear factor Y, subunit C3 |