PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v1428970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 238aa MW: 26093.4 Da PI: 9.4435 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26 | 1.7e-08 | 194 | 238 | 4 | 52 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++ Lj5g3v1428970.1 194 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQ 238 8**************************....899*************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.32E-12 | 188 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.95E-7 | 188 | 238 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.9E-12 | 190 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.939 | 190 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.7E-6 | 194 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MLHCLNTPGS LAGNCSDMTV LERQRIKLPQ GNGFNCVFPS SSSSDSGSSL AEVVAQAHSI 60 KFHMPPAGPE PSPASGPDLN SAISRTFSCP PTLVEAKANE FFSIKKESYK KRKSDKPHNP 120 KIVAENDSKD KRIKVDSEDG ESNITGKISI KDNKTATKSK NRGTCANSSN SKENEDQKLD 180 YIHVRARRGQ ATDSHSLAER VRREKISERM KYLQDLVPGC NKITGKAGML DEIINYVQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.349 | 1e-48 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v1428970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004546 | 0.0 | AP004546.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT43N05, TM0178, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027356050.1 | 6e-86 | transcription factor bHLH63-like | ||||
TrEMBL | C0JP13 | 1e-159 | C0JP13_LOTJA; Putative basic helix-loop-helix protein BHLH7 | ||||
STRING | GLYMA06G01430.1 | 2e-80 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3618 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18300.1 | 3e-40 | bHLH family protein |