PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj5g3v1412970.2

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bHLH

Protein Properties

Length: 342aa MW: 37616 Da PI: 6.8598

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v1412970.2	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.5	1.1e-08	191	235	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++L + v+Y+k L Lj5g3v1412970.2 191 HSIAERLRRERIAERMRALQELVPSiN------KSDRAAMLDEIVDYVKFL 235 99*********************77......99************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.3E-14	184	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.22E-10	184	240	No hit	No description
PROSITE profile	PS50888	15.713	186	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-14	188	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.4E-6	191	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-9	192	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MVSEGLGDDF LEQILAVPEA YGRTVVGDGG VLQLGLRGGG GGIPLGLNLE QSAFLTHHQD 60 TRFIDNNNSN NINSNNHHHQ HHQLSLNNHH HHSENYATSS SSSSITDRES MQMRGLFPTF 120 GQLHTPTHAP SVRPTLPPPS QPQLHLHHQH QHHHQPLQNQ QPTPASNAHM QHPPGIRPRV 180 RARRGQATDP HSIAERLRRE RIAERMRALQ ELVPSINKSD RAAMLDEIVD YVKFLRLQVK 240 VLSMSRLGGA GAVAQLVADV PLSAVEGEDI EGGASEQAWS KWSNDGTEQQ VAKLMEEDVG 300 AAMQFLQSKA LCIMPISLAS AIFRMPQSEA STTIKPESDS QT

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MVSEGLGDDF LEQILAVPEA YGRTVVGDGG VLQLGLRGGG GGIPLGLNLE QSAFLTHHQD  60
TRFIDNNNSN NINSNNHHHQ HHQLSLNNHH HHSENYATSS SSSSITDRES MQMRGLFPTF  120
GQLHTPTHAP SVRPTLPPPS QPQLHLHHQH QHHHQPLQNQ QPTPASNAHM QHPPGIRPRV  180
RARRGQATDP HSIAERLRRE RIAERMRALQ ELVPSINKSD RAAMLDEIVD YVKFLRLQVK  240
VLSMSRLGGA GAVAQLVADV PLSAVEGEDI EGGASEQAWS KWSNDGTEQQ VAKLMEEDVG  300
AAMQFLQSKA LCIMPISLAS AIFRMPQSEA STTIKPESDS QT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	195	200	RLRRER

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.1847	0.0	pod\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v1412970.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT141638	0.0	BT141638.1 Lotus japonicus clone JCVI-FLLj-6C12 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014514572.1	1e-154	transcription factor UNE12 isoform X1
Swissprot	O22768	1e-76	UNE12_ARATH; Transcription factor UNE12
TrEMBL	C0JP10	0.0	C0JP10_LOTJA; Putative basic helix-loop-helix protein BHLH2
STRING	XP_007144828.1	1e-150	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11205	32	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.3	1e-63	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]