PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v1412970.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 342aa MW: 37616 Da PI: 6.8598 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.5 | 1.1e-08 | 191 | 235 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++L + v+Y+k L Lj5g3v1412970.2 191 HSIAERLRRERIAERMRALQELVPSiN------KSDRAAMLDEIVDYVKFL 235 99***********************77......99**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.3E-14 | 184 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.22E-10 | 184 | 240 | No hit | No description |
PROSITE profile | PS50888 | 15.713 | 186 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-14 | 188 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.4E-6 | 191 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-9 | 192 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MVSEGLGDDF LEQILAVPEA YGRTVVGDGG VLQLGLRGGG GGIPLGLNLE QSAFLTHHQD 60 TRFIDNNNSN NINSNNHHHQ HHQLSLNNHH HHSENYATSS SSSSITDRES MQMRGLFPTF 120 GQLHTPTHAP SVRPTLPPPS QPQLHLHHQH QHHHQPLQNQ QPTPASNAHM QHPPGIRPRV 180 RARRGQATDP HSIAERLRRE RIAERMRALQ ELVPSINKSD RAAMLDEIVD YVKFLRLQVK 240 VLSMSRLGGA GAVAQLVADV PLSAVEGEDI EGGASEQAWS KWSNDGTEQQ VAKLMEEDVG 300 AAMQFLQSKA LCIMPISLAS AIFRMPQSEA STTIKPESDS QT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 195 | 200 | RLRRER |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.1847 | 0.0 | pod| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v1412970.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT141638 | 0.0 | BT141638.1 Lotus japonicus clone JCVI-FLLj-6C12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014514572.1 | 1e-154 | transcription factor UNE12 isoform X1 | ||||
Swissprot | O22768 | 1e-76 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | C0JP10 | 0.0 | C0JP10_LOTJA; Putative basic helix-loop-helix protein BHLH2 | ||||
STRING | XP_007144828.1 | 1e-150 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11205 | 32 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 1e-63 | bHLH family protein |
Publications ? help Back to Top | |||
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