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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Lj5g3v1276100.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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| Family |
C3H |
| Protein Properties |
Length: 402aa MW: 44184.9 Da PI: 8.5101 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj5g3v1276100.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 35.7 | 1.4e-11 | 19 | 45 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C+++ rtG C++G++C+F+H+p
Lj5g3v1276100.1 19 PGEPDCSYYIRTGLCRFGATCRFNHPP 45
5789*********************97 PP
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| 2 | zf-CCCH | 39 | 1.4e-12 | 66 | 90 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+++C+++++tGtCk+G++CkF+H++
Lj5g3v1276100.1 66 QPECQYYLKTGTCKFGATCKFHHPR 90
799********************96 PP
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| 3 | zf-CCCH | 38.5 | 1.9e-12 | 112 | 136 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+++C +++rtG+Ck+G++CkF+H++
Lj5g3v1276100.1 112 ESECTYYLRTGQCKFGNTCKFNHPQ 136
679********************97 PP
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| 4 | zf-CCCH | 38 | 2.7e-12 | 263 | 289 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+++++C+f+++tG Ck+G+ C+F+H++
Lj5g3v1276100.1 263 PGQPECQFYMKTGDCKFGAVCRFHHPR 289
5789*********************96 PP
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| 5 | zf-CCCH | 38.2 | 2.3e-12 | 309 | 335 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++lC f++r+G+Ck+G++CkF H++
Lj5g3v1276100.1 309 PGEPLCVFYSRYGICKFGPSCKFDHPM 335
589**********************95 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 14.587 | 18 | 46 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.1E-5 | 18 | 45 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.9E-8 | 20 | 45 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.49E-5 | 23 | 46 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 7.5E-4 | 24 | 44 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.159 | 63 | 91 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.0E-6 | 63 | 90 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.6E-10 | 66 | 90 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.44E-6 | 67 | 92 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.1E-5 | 69 | 91 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.14 | 109 | 137 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 8.7E-5 | 109 | 136 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.22E-6 | 110 | 137 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.4E-10 | 112 | 136 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 7.0E-5 | 115 | 135 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.511 | 262 | 290 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 7.8E-6 | 262 | 289 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 8.4E-9 | 264 | 289 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.88E-5 | 266 | 291 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 268 | 290 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.821 | 308 | 336 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.4E-7 | 308 | 335 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.3E-9 | 310 | 335 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.7E-5 | 311 | 335 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 6.3E-4 | 313 | 333 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 402 aa
Download sequence Send
to blast |
MMKLRSSEAM ESGPYPQRPG EPDCSYYIRT GLCRFGATCR FNHPPNRKLV IATARMMGEF 60
PERIGQPECQ YYLKTGTCKF GATCKFHHPR DQAGIAGRVA LNILGYPLRP NESECTYYLR 120
TGQCKFGNTC KFNHPQPSNM MLSLRGSPVY SAVHSPTTLG QQSYTGGITN WPRASYVHSP 180
RWQGPSSYTP LILPQGMVSV PGWSYSGHMG SISTSDSPQQ SMGNDQGELE NAGSHGAYSQ 240
FRAGTIPVGY YALQRESIFP ERPGQPECQF YMKTGDCKFG AVCRFHHPRD RQIPAPDCIL 300
SPLGLPLRPG EPLCVFYSRY GICKFGPSCK FDHPMGVFTY NISAPPSADA PGRRLLGSSS 360
GTAALNLSSG GLVESSSAKP RRLSVSEARQ IPSDDDDIDD DR
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