PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Dof

Protein Properties

Length: 286aa MW: 31450.1 Da PI: 8.1464

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v1236780.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.8e-39	40	100	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+a++cprC+s ntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk++s Lj5g3v1236780.1 40 KEEAVNCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKHRS 100 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-29	34	98	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-33	42	98	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.435	44	98	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	46	82	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MDTAQWPQEI VMKPIEGIVV TNTCPKPESM LEIKKARPQK EEAVNCPRCH SINTKFCYYN 60 NYSLTQPRYF CKTCRRYWTE GGSLRNIPVG GGSRKNKHRS NSVISTPSTT SNKNLPDLVT 120 PTCTPNPKIF NDGQDLNLGF PKISELVHQN NNTSFCSTTT SSTSHLSALG LLTGITSSSS 180 SSRGLQYSFM PVPVSADPNT VYTTCGFPMH DFKPTLNFTL DGNGSDYASF QGHVQDTSTG 240 RVLFPFEDLK QVSSTTARMD HNNDKEVQQG DSAGYWSGML GGGGSW

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.1369	0.0	pod\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269\|PubMed:20563990}.
Uniprot	TISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269\|PubMed:20563990}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v1236780.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB378644	0.0	AB378644.1 Lotus japonicus Dof-M153 mRNA for transcription factor C2C2-Dof, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027365662.1	1e-123	dof zinc finger protein DOF4.6 isoform X1
Swissprot	Q8LAP8	2e-57	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	B3IX44	0.0	B3IX44_LOTJA; Transcription factor C2C2-Dof
STRING	EOY23946	1e-110	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	6e-51	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Asamizu E,Shimoda Y,Kouchi H,Tabata S,Sato S A positive regulatory role for LjERF1 in the nodulation process is revealed by systematic analysis of nodule-associated transcription factors of Lotus japonicus. Plant Physiol., 2008. 147(4): p. 2030-40 [PMID:18567832]