PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

LBD

Protein Properties

Length: 132aa MW: 14425.6 Da PI: 9.1816

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v1050270.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117	1.1e-36	13	102	1	89
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll+ lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq++ Lj5g3v1050270.1 13 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLSYLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFSLQQQVCF 102 7***********************89*********************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.185	12	116	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.2E-35	13	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MSGSGSSSSS GSPCGACKFL RRKCVRGCVF APYFCHEQGA THFAAIHKVF GASNVSKLLS 60 YLPVSDRCEA AVTISYEAQA RLQDPIYGCV SHIFSLQQQV CFPLTSHNMF GINSLFLRIN 120 FKTHKLKASP QN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-34	6	100	4	97	LOB family transfactor Ramosa2.1
5ly0_B	2e-34	6	100	4	97	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269\|PubMed:12068116}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269\|PubMed:17259263}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v1050270.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631, ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT137601	1e-166	BT137601.1 Lotus japonicus clone JCVI-FLLj-14A20 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004495114.1	1e-60	LOB domain-containing protein 29
Refseq	XP_021658319.1	9e-61	LOB domain-containing protein 29-like
Refseq	XP_021898313.1	1e-60	LOB domain-containing protein 29-like
Swissprot	Q9M2J7	3e-57	LBD29_ARATH; LOB domain-containing protein 29
TrEMBL	I3SAV4	4e-67	I3SAV4_LOTJA; Uncharacterized protein
STRING	evm.model.supercontig_50.42	5e-60	(Carica papaya)
STRING	XP_004495114.1	5e-60	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3571	33	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	3e-59	lateral organ boundaries-domain 29

Publications ? help Back to Top
Gupta A,Singh M,Laxmi A Interaction between glucose and brassinosteroid during the regulation of lateral root development in Arabidopsis. Plant Physiol., 2015. 168(1): p. 307-20 [PMID:25810094] Porco S, et al. Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3. Development, 2016. 143(18): p. 3340-9 [PMID:27578783] Lee K,Seo PJ High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis. Planta, 2017. 246(4): p. 797-802 [PMID:28766014] Xu C,Cao H,Xu E,Zhang S,Hu Y Genome-Wide Identification of Arabidopsis LBD29 Target Genes Reveals the Molecular Events behind Auxin-Induced Cell Reprogramming during Callus Formation. Plant Cell Physiol., 2018. 59(4): p. 744-755 [PMID:29121271] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]