PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

C2H2

Protein Properties

Length: 107aa MW: 11974.4 Da PI: 7.9369

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v1048180.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.4e-05	18	40	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F++ L H++ H Lj5g3v1048180.1 18 YACSFCKKEFKSAQALGGHMNIH 40 89*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.71E-8	15	45	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.0E-6	16	44	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	8.5E-8	17	42	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.801	18	45	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.005	18	40	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	20	40	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
MEENYLDRNA WAWPSRTYAC SFCKKEFKSA QALGGHMNIH RREKARLRAS SLPSSVSECP 60 KTNPINDSNP TNLLSPPPNF SDEVLNYAQP SPIYIPCDFS LSSPVPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	1e-11	13	40	2	29	superman protein
2l1o_A	1e-11	13	40	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Not expressed in the inflorescence meristem or in the flowers at stages 1 and 2. First expressed in the precursor cells of petal primordia in stage 3 flowers and in the developing petal primordia up to stage 6. Not expressed at later stages. {ECO:0000269\|PubMed:14681191}.
Uniprot	TISSUE SPECIFICITY: Strongly expressed in inflorescences and flowers, and weakly in siliques, seedlings and roots. In flowers, it is expressed in petal primordia and their precursor cells. Also expressed in the lateral root caps and the basal cells of lateral roots. {ECO:0000269\|PubMed:14681191}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator essential for petal development. Required for the early development of the organ primordia of the second whorl. Acts downstream of AP1 and PTL. {ECO:0000269\|PubMed:14681191}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v1048180.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027368067.1	1e-28	transcriptional regulator SUPERMAN-like
Swissprot	Q9LHS9	8e-18	RBE_ARATH; Probable transcriptional regulator RABBIT EARS
TrEMBL	A0A371I716	2e-26	A0A371I716_MUCPR; Transcriptional regulator SUPERMAN (Fragment)
STRING	GLYMA19G34531.1	3e-23	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2843	31	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06070.1	2e-19	C2H2 family protein

Publications ? help Back to Top
Li J, et al. RABBIT EARS regulates the transcription of TCP4 during petal development in Arabidopsis. J. Exp. Bot., 2016. 67(22): p. 6473-6480 [PMID:27838638]