PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0921030.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 257aa    MW: 27007.1 Da    PI: 10.6668
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0921030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.66.8e-063458226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     k e+C  f+ t  C++G+ C+F H 
  Lj5g3v0921030.1 34 KLEPCTKFFSTAGCPFGEACHFRHH 58
                     779*******************885 PP
2zf-CCCH37.83.2e-12224248126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt+lC++fa+ G C yG+rC+FaHg
  Lj5g3v0921030.1 224 FKTKLCQNFAK-GSCAYGERCHFAHG 248
                      69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.543259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3713260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-53359IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-73458IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-43458IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.21E-15108188IPR004088K Homology domain, type 1
SMARTSM003223.2E-11118188IPR004087K Homology domain
PROSITE profilePS5008414.571119183IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.105.7E-16119187IPR004088K Homology domain, type 1
CDDcd001052.28E-13123183No hitNo description
PfamPF000131.2E-11123185IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.108.7E-15221254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-8222253IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-7223249IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.408223250IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9224248IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDFRKRGRSE VAVNGAIKKT KQEMESLSTG VGSKLEPCTK FFSTAGCPFG EACHFRHHVP  60
GGYKVVEQML NKNSIVATSQ SSRNVVAPPV LNGSTVGTGG GMGGRLIAPP GLASSFGASS  120
KAKISVKASL AGAIIGKGGE NSKQICYQTG AKLSIREHES DPNLRNIELV GSFEQIENAS  180
NMVRELILTG SMLAPPKSAP AVRGAPPKSA PAVRGAPTPL RSNFKTKLCQ NFAKGSCAYG  240
ERCHFAHGAA NLRKLRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0921030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0958739e-46BT095873.1 Soybean clone JCVI-FLGm-20C9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027365832.11e-113zinc finger CCCH domain-containing protein 36-like isoform X3
SwissprotQ9C7C33e-81C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
SwissprotQ9FG303e-81C3H52_ARATH; Zinc finger CCCH domain-containing protein 52
TrEMBLA0A0B2R2B21e-101A0A0B2R2B2_GLYSO; Zinc finger CCCH domain-containing protein 14
TrEMBLI1N9791e-101I1N979_SOYBN; Uncharacterized protein
STRINGGLYMA19G32910.11e-102(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.16e-73C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]