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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v0889470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C2H2 | ||||||||
Protein Properties | Length: 166aa MW: 18100.3 Da PI: 9.1577 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 9e-05 | 101 | 123 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg Fs+ +L+ H ++ H Lj5g3v0889470.1 101 QCPQCGAKFSSVTTLVEHVQKvH 123 7******************9988 PP | |||||||
2 | zf-C2H2 | 18.7 | 4.6e-06 | 138 | 160 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F+++ +L+ H + H Lj5g3v0889470.1 138 VCPKCSKGFRDPVSLVEHVERdH 160 7*****************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1110.10 | 5.8E-4 | 3 | 37 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00355 | 0.0029 | 100 | 123 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.64 | 100 | 128 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.1E-5 | 101 | 156 | No hit | No description |
Pfam | PF13894 | 1.7E-4 | 101 | 123 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 102 | 123 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.037 | 137 | 165 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.5 | 137 | 160 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 139 | 160 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MLDHCLKHRF GPDHKCPGPK KLETSFPFLS LLNKNRKEER KPNSSSTPSS SKWSSSFLNA 60 ASNIRASAEA GMSKLSGEIN QVWQTTKDGV GQNSGSEHVE QCPQCGAKFS SVTTLVEHVQ 120 KVHERSGNQS GVRVAIDVCP KCSKGFRDPV SLVEHVERDH GGSSRA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.17255 | 0.0 | floral bud| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v0889470.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027366855.1 | 2e-93 | zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 isoform X1 | ||||
Swissprot | Q0D5B9 | 2e-49 | SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
TrEMBL | A0A371IFR9 | 3e-86 | A0A371IFR9_MUCPR; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 (Fragment) | ||||
STRING | GLYMA02G31550.2 | 5e-83 | (Glycine max) | ||||
STRING | XP_010102532.1 | 5e-83 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5864 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41835.1 | 3e-46 | C2H2 family protein |
Publications ? help Back to Top | |||
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