PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0889470.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 166aa    MW: 18100.3 Da    PI: 9.1577
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0889470.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79e-05101123223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +Cp Cg  Fs+  +L+ H ++ H
  Lj5g3v0889470.1 101 QCPQCGAKFSSVTTLVEHVQKvH 123
                      7******************9988 PP

2zf-C2H218.74.6e-06138160223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +Cp+C+k F+++ +L+ H  + H
  Lj5g3v0889470.1 138 VCPKCSKGFRDPVSLVEHVERdH 160
                      7*****************99888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1110.105.8E-4337IPR000058Zinc finger, AN1-type
SMARTSM003550.0029100123IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64100128IPR007087Zinc finger, C2H2
SuperFamilySSF576671.1E-5101156No hitNo description
PfamPF138941.7E-4101123No hitNo description
PROSITE patternPS000280102123IPR007087Zinc finger, C2H2
PROSITE profilePS501579.037137165IPR007087Zinc finger, C2H2
SMARTSM003555.5137160IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280139160IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MLDHCLKHRF GPDHKCPGPK KLETSFPFLS LLNKNRKEER KPNSSSTPSS SKWSSSFLNA  60
ASNIRASAEA GMSKLSGEIN QVWQTTKDGV GQNSGSEHVE QCPQCGAKFS SVTTLVEHVQ  120
KVHERSGNQS GVRVAIDVCP KCSKGFRDPV SLVEHVERDH GGSSRA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.172550.0floral bud| root
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0889470.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027366855.12e-93zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 isoform X1
SwissprotQ0D5B92e-49SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A371IFR93e-86A0A371IFR9_MUCPR; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 (Fragment)
STRINGGLYMA02G31550.25e-83(Glycine max)
STRINGXP_010102532.15e-83(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.13e-46C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]