PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj5g3v0841080.2

Common Name

CBF-A01

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

NF-YA

Protein Properties

Length: 332aa MW: 36369.9 Da PI: 9.2716

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v0841080.2	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	98.7	6.2e-31	159	215	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RRq+Rak+ +e+kl +k kpy+heSRh hA+rRpRg+gGrF Lj5g3v0841080.2 159 DGPIYVNAKQYHGIIRRRQSRAKAVQENKL-IKRSKPYMHESRHLHAMRRPRGCGGRF 215 57**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.5E-35	157	218	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.76	158	218	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.4E-26	161	215	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.6E-22	161	183	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.6E-22	192	215	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MAMQTVYLKE HERMGHSSVG QLSSVTSAPW WGSQSVYGDS CGQIKPFSLE FSNYVDHFAA 60 NKNSVRGAEQ LFDKGLTTQF TIFSDDCKMS GEAQNLEATL SLQPSVTVAE PRNRFELGFN 120 QPMICAKYPY MDQFYGLFSA YGPQIPGRMM LPLNLSTDDG PIYVNAKQYH GIIRRRQSRA 180 KAVQENKLIK RSKPYMHESR HLHAMRRPRG CGGRFLNTRN SSDGNGKSGS ELHKKTGGLG 240 RHMQSSASQS SEVLQSEVGT LNSSKETNGS SPNISGSEVT SMYSLGGLDS FAVNHLGSAI 300 HHSLADMIDG GHGIIMPTKW VGAAGSCFNL KV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-16	159	222	2	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.16988	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v0841080.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB378633	0.0	AB378633.1 Lotus japonicus CBF-A01 mRNA for transcription factor CCAAT, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020226778.1	0.0	nuclear transcription factor Y subunit A-10 isoform X1
TrEMBL	B3IX33	0.0	B3IX33_LOTJA; Transcription factor CCAAT
STRING	GLYMA02G35190.2	1e-176	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	1e-51	nuclear factor Y, subunit A10

Publications ? help Back to Top
Asamizu E,Shimoda Y,Kouchi H,Tabata S,Sato S A positive regulatory role for LjERF1 in the nodulation process is revealed by systematic analysis of nodule-associated transcription factors of Lotus japonicus. Plant Physiol., 2008. 147(4): p. 2030-40 [PMID:18567832]