PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v0841080.2 | ||||||||
Common Name | CBF-A01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | NF-YA | ||||||||
Protein Properties | Length: 332aa MW: 36369.9 Da PI: 9.2716 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 98.7 | 6.2e-31 | 159 | 215 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RRq+Rak+ +e+kl +k kpy+heSRh hA+rRpRg+gGrF Lj5g3v0841080.2 159 DGPIYVNAKQYHGIIRRRQSRAKAVQENKL-IKRSKPYMHESRHLHAMRRPRGCGGRF 215 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.5E-35 | 157 | 218 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.76 | 158 | 218 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.4E-26 | 161 | 215 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.6E-22 | 161 | 183 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.6E-22 | 192 | 215 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MAMQTVYLKE HERMGHSSVG QLSSVTSAPW WGSQSVYGDS CGQIKPFSLE FSNYVDHFAA 60 NKNSVRGAEQ LFDKGLTTQF TIFSDDCKMS GEAQNLEATL SLQPSVTVAE PRNRFELGFN 120 QPMICAKYPY MDQFYGLFSA YGPQIPGRMM LPLNLSTDDG PIYVNAKQYH GIIRRRQSRA 180 KAVQENKLIK RSKPYMHESR HLHAMRRPRG CGGRFLNTRN SSDGNGKSGS ELHKKTGGLG 240 RHMQSSASQS SEVLQSEVGT LNSSKETNGS SPNISGSEVT SMYSLGGLDS FAVNHLGSAI 300 HHSLADMIDG GHGIIMPTKW VGAAGSCFNL KV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-16 | 159 | 222 | 2 | 65 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.16988 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v0841080.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB378633 | 0.0 | AB378633.1 Lotus japonicus CBF-A01 mRNA for transcription factor CCAAT, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020226778.1 | 0.0 | nuclear transcription factor Y subunit A-10 isoform X1 | ||||
TrEMBL | B3IX33 | 0.0 | B3IX33_LOTJA; Transcription factor CCAAT | ||||
STRING | GLYMA02G35190.2 | 1e-176 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.2 | 1e-51 | nuclear factor Y, subunit A10 |
Publications ? help Back to Top | |||
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