PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0705390.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Trihelix
Protein Properties Length: 360aa    MW: 39500.2 Da    PI: 8.9933
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0705390.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.82.9e-18281987
         trihelix  9 aLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                     +L+ea++e+ ++l+rg+l++ +Weev++++  r +  ++s +qCk+k +nl+kryk ++++++++ + sss++p+f+q+e+
  Lj5g3v0705390.1  2 CLLEAYTEKFTQLNRGNLRGRDWEEVAAVVseRCENQSKSVEQCKNKVDNLKKRYKLERHRMNNG-CISSSHWPWFKQMEH 81
                     7*****************************666677899*************************8.999**********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-17282No hitNo description
Gene3DG3DSA:3.40.1160.103.0E-65128360IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536335.5E-53134360IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042543.02E-98136360No hitNo description
PfamPF006962.0E-26137347IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MCLLEAYTEK FTQLNRGNLR GRDWEEVAAV VSERCENQSK SVEQCKNKVD NLKKRYKLER  60
HRMNNGCISS SHWPWFKQME HIVGNSLPTK FSDEDKALVP ASNSPRQSKR YGVATPSSGG  120
QVNSMKSKAL SNLRWRRVVL KISGAALTGS DTCNLDPKVA MLVSSEVAIA SRLGVEVVIV  180
VGGRNFFCGD AWVTATGLER CTAYQVGMMA TVMNSILLQS TLEKMGVQTR VQTSLAMQEF  240
AEPYNRQRAI RHLEKGRVVI FGGVGIGAGN PLFSTDIAAA LRASELNAQA VLKGTNVDGV  300
YDCNSRDNNF TFEHISFREL ASRGVTSMDM SALTFCEENA IPVVVFNLLA PGNISKALCG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A2e-571273601232Uridylate kinase
3ek5_B2e-571273601232Uridylate kinase
3ek5_C2e-571273601232Uridylate kinase
3ek5_D2e-571273601232Uridylate kinase
3ek5_E2e-571273601232Uridylate kinase
3ek5_F2e-571273601232Uridylate kinase
3ek6_A2e-571273601232Uridylate kinase
3ek6_B2e-571273601232Uridylate kinase
3ek6_C2e-571273601232Uridylate kinase
3ek6_D2e-571273601232Uridylate kinase
3ek6_E2e-571273601232Uridylate kinase
3ek6_F2e-571273601232Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0705390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150414e-86AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004497592.10.0uncharacterized protein LOC101509939
TrEMBLA0A1S2Y2660.0A0A1S2Y266_CICAR; uncharacterized protein LOC101509939
STRINGXP_004497592.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-177Trihelix family protein