PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v0659720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | G2-like | ||||||||
Protein Properties | Length: 464aa MW: 51664.6 Da PI: 5.0138 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.7 | 1.1e-27 | 133 | 186 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++F+ av+qL G++kA+Pk++l++m+v+ Lt+e+v+SHLQkYRl Lj5g3v0659720.1 133 KPRVVWSGELHQKFLAAVNQL-GIDKAVPKKVLKMMDVENLTRENVASHLQKYRL 186 79*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00156 | 6.76E-10 | 1 | 62 | No hit | No description |
SuperFamily | SSF52172 | 2.13E-12 | 1 | 66 | IPR011006 | CheY-like superfamily |
Pfam | PF00072 | 3.6E-6 | 1 | 57 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:3.40.50.2300 | 7.0E-16 | 1 | 80 | No hit | No description |
PROSITE profile | PS50110 | 21.384 | 1 | 62 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS51294 | 11.961 | 130 | 189 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.2E-20 | 131 | 190 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.2E-29 | 131 | 191 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.6E-24 | 133 | 186 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-6 | 135 | 185 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MPEIDGFKFL ELVGLIIDIP VILLSVNGDS NMVMKGITHG ACHYMLKPVR VEELKTIWQH 60 VIRNRKIGSK EKEGTKTSSN HETLNYSDNG QGSAATPNSD QNGKSSKKRK YQDFDDVEHE 120 NGTDSGDSSA PKKPRVVWSG ELHQKFLAAV NQLGIDKAVP KKVLKMMDVE NLTRENVASH 180 LQKYRLYLKR ISSMANQQAN PILGSVSRKN AFGSRLNTPA THSSRTLQVD QFQHSKGVSH 240 IPNQNNTFML EENQRPSELS ISNNDLEDNS QDKQTGRVST SLAPQDSQFS LPLLDNDRSN 300 DVCSTEYLAN ECFGPASVSC TDNMTPVPWN ISCNAPFEGW DNHNQNSTYH SHVSGDSIGS 360 MIPANGDPVN SAFNFCDPLQ MNHDEIIELT EECSIKPHQL HVMDQQRYQN SSICNCLGSP 420 EDLDSAMMMK LVEEETDIML NLEDMIDFTG IIDLTPFLDS STGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 6e-24 | 129 | 192 | 1 | 64 | ARR10-B |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v0659720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010560 | 0.0 | AP010560.1 Lotus japonicus genomic DNA, clone: LjT18K19, TM1729, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027354576.1 | 1e-117 | two-component response regulator ARR12 isoform X1 | ||||
TrEMBL | A0A0S3RCH7 | 1e-113 | A0A0S3RCH7_PHAAN; Two-component response regulator | ||||
STRING | GLYMA06G06730.1 | 1e-103 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18475 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 3e-66 | response regulator 12 |