PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0659660.3
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 263aa    MW: 29940 Da    PI: 10.8984
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0659660.3genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07136183448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E   lvd++ ++G g+W+ I r++      Rt+ +++++w+++l
  Lj5g3v0659660.3 136 WTLSEVVNLVDGISEYGVGRWTDIKRCLFsssSYRTPIDLRDKWRNLL 183
                      ********************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.68128187IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.7E-10128188IPR009057Homeodomain-like
SuperFamilySSF466891.09E-15130221IPR009057Homeodomain-like
SMARTSM007174.5E-8132185IPR001005SANT/Myb domain
CDDcd116601.40E-16134184No hitNo description
PfamPF139219.8E-7136196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVPSGTIQED ISVEKCKTSA PREKRFRKPT QRYIEEFSNS RSKEKVPTTA TKNKNLGVSS  60
CDELQIKIKA LKKITGKKSS DGNSDVTLSE LQVRRGRPKK EKLEYDNGPS PSESGDEYFT  120
PKSSRGKDRR QHQRMWTLSE VVNLVDGISE YGVGRWTDIK RCLFSSSSYR TPIDLRDKWR  180
NLLRSSSAQK CSKKEAEEND DIALRPLPSN VARRVRELAK IHPYPRQRGS KKSGINQVGS  240
VIASQNNRSS PISLRRRGVR MKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193100RRGRPKKE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.48290.0floral bud| flower| pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0659660.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1415590.0BT141559.1 Lotus japonicus clone JCVI-FLLj-2G6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027363798.11e-108uncharacterized protein LOC113871152 isoform X5
RefseqXP_027363799.11e-108uncharacterized protein LOC113871152 isoform X6
TrEMBLA0A151TIW11e-106A0A151TIW1_CAJCA; Telomere-binding protein 1
STRINGGLYMA10G06560.11e-104(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-26TRF-like 6