PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0659660.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 378aa    MW: 42534.4 Da    PI: 6.2984
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0659660.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.3e-07328375448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E   lvd++ ++G g+W+ I r++      Rt+ +++++w+++l
  Lj5g3v0659660.1 328 WTLSEVVNLVDGISEYGVGRWTDIKRCLFsssSYRTPIDLRDKWRNLL 375
                      ********************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.908320378IPR017930Myb domain
SMARTSM007174.5E-8324377IPR001005SANT/Myb domain
CDDcd116602.86E-17326376No hitNo description
SuperFamilySSF466894.21E-14326377IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-9326376IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDRKDYLRKC SNMKCQRVKV DESVPILQDE VMEVEHLLAE PRNDHVSVDG SLYPHTTLNG  60
KDDLELEVLD GLLDDVEIND LGGTDFFPGS CGEYFLDFEF ANIAETPGYD PCEGSFLQNS  120
SSESHSSGLS GSSIIGGVSE STKIPISQSE CKKNSHGAFR NHPGQPSNVD CMYNISLDLH  180
HLHGLNNDHP LTGDILSYEK EDISVEKCKT SAPREKRFRK PTQRYIEEFS NSRSKEKVPT  240
TATKNKNLGV SSCDELQIKI KALKKITGKK SSDGNSDVTL SELQVRRGRP KKEKLEYDNG  300
PSPSESGDEY FTPKSSRGKD RRQHQRMWTL SEVVNLVDGI SEYGVGRWTD IKRCLFSSSS  360
YRTPIDLRDK WRNLLRSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285292RRGRPKKE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.48290.0floral bud| flower| pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0659660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1415590.0BT141559.1 Lotus japonicus clone JCVI-FLLj-2G6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027363799.11e-174uncharacterized protein LOC113871152 isoform X6
TrEMBLG7IA941e-167G7IA94_MEDTR; Myb transcription factor
STRINGAES607111e-168(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-22TRF-like 6