PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0508090.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 477aa    MW: 54769.6 Da    PI: 9.1051
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0508090.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.5e-1614105199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffk+ t+  + ++g l++p++f++++gg+ +++    l+ ++g  W++++  +k++g +++++GWk+F+k   L+ g +v+F+++++s f   v
  Lj5g3v0508090.1  14 FFKIITT-TSIETGELRIPNNFTKRYGGDMANP--TFLKPPDGTDWKIYH--SKTDGDVWFQNGWKDFAKYYSLDHGHMVLFEYKDTSHF--GV 100
                      7787755.5556667***********9999887..89999**********..********************************998988..99 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      ++f+k
  Lj5g3v0508090.1 101 HIFDK 105
                      99998 PP
2B350.34.3e-16219305197
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f +v++p++v+  + l +p  fa+++ ++   ++++ l+ ++gr+W+v +  + ++    + +GWk+F + n+Lk+gD+++F+l+++   +l+v
  Lj5g3v0508090.1 219 FMTVMKPAYVNGYS-LHIPSFFAKKYLKN---ETDVLLQVLDGRTWSVSF--NLGK----FNAGWKKFTSVNNLKVGDVCLFELNKSVPLSLKV 302
                      78999999999998.***********655...347***************..7777....99**********************9888888888 PP

                      EEE CS
               B3  95 kvf 97 
                       +f
  Lj5g3v0508090.1 303 LIF 305
                      877 PP
3B343.17.8e-14378475198
                      EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      ff v + +d ++  r ++pk f+++h + ++++++t++  + + +   vkl+   k+g   l+kGW eF+k  +L++gD +vF+l+++++  l 
  Lj5g3v0508090.1 378 FFIVNIAPDKNRDYRPRVPKLFIRKHfNDIQQSEQTVI-LQCEKKLCPVKLTCYPKKGPSRLSKGWVEFAKKSKLEVGDACVFELINKEDPVLD 470
                      788899999999**************744444444555.5557777888886666666677*************************98888888 PP

                      EEEE- CS
               B3  94 vkvfr 98 
                      v+++r
  Lj5g3v0508090.1 471 VHIYR 475
                      88877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-209106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-2112106IPR015300DNA-binding pseudobarrel domain
CDDcd100172.13E-1413104No hitNo description
PROSITE profilePS5086313.16913106IPR003340B3 DNA binding domain
PfamPF023624.4E-1514105IPR003340B3 DNA binding domain
SMARTSM010193.5E-1014106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-18211305IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-17212305IPR015300DNA-binding pseudobarrel domain
CDDcd100172.24E-16217306No hitNo description
PROSITE profilePS5086311.42218306IPR003340B3 DNA binding domain
PfamPF023623.4E-14219305IPR003340B3 DNA binding domain
SMARTSM010195.1E-14219308IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.8E-18371475IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-16372475IPR015300DNA-binding pseudobarrel domain
PfamPF023623.9E-12378475IPR003340B3 DNA binding domain
CDDcd100171.59E-14378475No hitNo description
SMARTSM010191.4E-5378477IPR003340B3 DNA binding domain
PROSITE profilePS508639.968378477IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MTRNMPNNHS PILFFKIITT TSIETGELRI PNNFTKRYGG DMANPTFLKP PDGTDWKIYH  60
SKTDGDVWFQ NGWKDFAKYY SLDHGHMVLF EYKDTSHFGV HIFDKSTLEI RYPSHENQDE  120
EHNPDQIDDD SVEILDKIPP CKKTKLKSPM SCPKPRKKLR TSTSEDVGES PELHNLPKQV  180
KIEDDAGRTT ECLEGEDLTS KITEALNRAR TFQSKFPSFM TVMKPAYVNG YSLHIPSFFA  240
KKYLKNETDV LLQVLDGRTW SVSFNLGKFN AGWKKFTSVN NLKVGDVCLF ELNKSVPLSL  300
KVLIFPLAEE PHSLPRSLVQ GDRVNHINYG RFRYTESQNV LTSKCAETIK RTSKLISPCP  360
LKNAALEEAN KFNSNNPFFI VNIAPDKNRD YRPRVPKLFI RKHFNDIQQS EQTVILQCEK  420
KLCPVKLTCY PKKGPSRLSK GWVEFAKKSK LEVGDACVFE LINKEDPVLD VHIYRGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1420530935144B3 domain-containing transcription factor VRN1
4i1k_B1e-1420530935144B3 domain-containing transcription factor VRN1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159KPRKKLR
2154160PRKKLRT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.49071e-102floral bud| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0508090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048960.0AP004896.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT16I07, TM0040, complete sequence.
GenBankAP0103090.0AP010309.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjB01H03, BM1799, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019459426.11e-144PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-41B3 family protein