PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0308790.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 344aa    MW: 38462.5 Da    PI: 4.5518
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0308790.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.6e-102683081055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR++iN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Lj5g3v0308790.1 268 RKRREKINERLRILQNLVPNG-----TKVDISTMLEEAVNYVKFLQ 308
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.301258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-14258323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-12263318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.63E-12267312No hitNo description
PfamPF000109.7E-8268308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEPVGVFPDG EWDFFRRMFA GEEQGYSNFA LQNDELNNIG TQFCSAPETG ENELMFYSLD  60
AHNSNYSQHI SQENSYSSNC SGDTVFNYFS YPDHMLANNY TCGAASMDFC MDENYFASFV  120
PSLLADIAME ENVNNLSEHV GSERLENSAD YRHQIQLQLK RKLDVLEPEV PANDKTNNRA  180
ESQKKKPRLS KDGQGCMKNS RSKKNLQKLA SNGEEAEETT TGSNGQSSCS SITEDDNASM  240
ENSVGATSIG KTRASRGSAT DPQSLYARKR REKINERLRI LQNLVPNGTK VDISTMLEEA  300
VNYVKFLQVQ IKLLSSDDMW MYAPLAYNGL DIGLNLNLNS SPPL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267272RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0308790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027333784.11e-157transcription factor bHLH85-like
TrEMBLA0A371FJK11e-146A0A371FJK1_MUCPR; Transcription factor bHLH85 (Fragment)
STRINGGLYMA17G35423.11e-140(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.17e-49root hair defective 6-like 4