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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Lj5g3v0155490.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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| Family |
SRS |
| Protein Properties |
Length: 330aa MW: 35313.4 Da PI: 7.472 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj5g3v0155490.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 211.5 | 2.1e-65 | 125 | 267 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssae 95
+sg+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqqla++++++ s+r+r+ ++ +a s + ++ +
Lj5g3v0155490.1 125 ASGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLATLQNQQH-------SRRHRDG-NQDVAAGSLAPVPIT- 209
5789****************************************************9966553.......3444443.222233333333433. PP
DUF702 96 skkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
++ le ++P+e++s+avfrcv+vs++d ++e ++Yqtav+igGhvfkGiLydqG ++
Lj5g3v0155490.1 210 -STGLELGQFPPELNSPAVFRCVKVSAMDAQDERYGYQTAVNIGGHVFKGILYDQGQDN 267
.45689999***********************************************986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 330 aa
Download sequence Send
to blast |
MAGFFSLGSG SGSGRGSASA QQNKDHEEEQ QERDHTNNTL LFRNEEIYNK GFEIWPQSSY 60
HNQQNLTSYY SFGVGPSRRN NNNNNPSSSN VNNDDVSVSF SDESTRFGFT VVRPGGGGGG 120
FGGGASGGMN CQDCGNQAKK DCPHLRCRTC CKSRGFQCQT HVKSTWVPAA KRRERQQQLA 180
TLQNQQHSRR HRDGNQDVAA GSLAPVPITS TGLELGQFPP ELNSPAVFRC VKVSAMDAQD 240
ERYGYQTAVN IGGHVFKGIL YDQGQDNAPN YTNAGAGEGS PGGGGASGEG APPQNLLTAT 300
TSGNPFDSSL YPAPLNAFMA GTQFFPPPRS
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015036 | 4e-33 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
