PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj5g3v0122180.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bZIP

Protein Properties

Length: 155aa MW: 17684 Da PI: 7.9726

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v0122180.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36	1.5e-11	30	88	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +rkq+N e+ArrsR K++ + L v+ L++eN++ ++++ +++++ ++++e+ Lj5g3v0122180.1 30 RKRKRKQSNCESARRSRMGKQKHFDDLNVQVERLTKENSEILNRVNLITQHYVNVEAEN 88 6789*********************************************9998877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-11	26	90	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.553	28	87	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.2E-10	28	80	No hit	No description
SuperFamily	SSF57959	1.81E-9	30	82	No hit	No description
Pfam	PF00170	8.4E-9	30	85	IPR004827	Basic-leucine zipper domain
CDD	cd14702	3.25E-18	31	81	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MASSSGNSSI STKFHSSGSE EDLQLLMDQR KRKRKQSNCE SARRSRMGKQ KHFDDLNVQV 60 ERLTKENSEI LNRVNLITQH YVNVEAENCI LRAQMGELSQ RLQSLNAIIS LINTTTTTGI 120 CQNDCFLTIA DNFMNPMNMH YLNQPIVASA EVFQW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	34	RKRKRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.2059	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269\|PubMed:23461773}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269\|PubMed:23461773}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v0122180.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT136429	0.0	BT136429.1 Lotus japonicus clone JCVI-FLLj-7D4 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019435393.1	2e-75	PREDICTED: bZIP transcription factor 11-like
Swissprot	C0Z2L5	2e-45	BZP44_ARATH; bZIP transcription factor 44
TrEMBL	I3S7I2	1e-108	I3S7I2_LOTJA; Uncharacterized protein
STRING	XP_004499193.1	9e-66	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF613	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75390.1	7e-48	basic leucine-zipper 44

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]