PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v0106030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 97aa MW: 11184.6 Da PI: 8.8432 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.7 | 7.1e-10 | 7 | 51 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WTt +++ +a + + ++ +W + ar +g g+t +++k ++ + Lj5g3v0106030.1 7 WTTKQNKRFENALAIYDKDtpdRWQKLARAVG-GKTVEEVKKHYEM 51 ********************************.***********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.294 | 2 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 7.2E-7 | 3 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.3E-12 | 5 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-6 | 7 | 52 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.91E-6 | 7 | 53 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-4 | 7 | 59 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MTSSSGWTTK QNKRFENALA IYDKDTPDRW QKLARAVGGK TVEEVKKHYE MLVDDLKQIE 60 EGHVPLPNYR NAATIGGSNK GYTYMDEEQR MKFLSLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-30 | 1 | 97 | 1 | 93 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v0106030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027333303.1 | 2e-58 | protein RADIALIS-like 3 | ||||
Swissprot | F4JVB8 | 5e-34 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A445H2R2 | 2e-56 | A0A445H2R2_GLYSO; Protein RADIALIS-like 1 isoform A | ||||
TrEMBL | K7M5F6 | 2e-56 | K7M5F6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G08101.1 | 3e-57 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-36 | RAD-like 1 |
Publications ? help Back to Top | |||
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