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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj5g3v0065670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 28185.9 Da PI: 8.0858 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.1 | 9.9e-19 | 36 | 81 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v+++G ++W++I+r++ gR++k+c++rw + Lj5g3v0065670.1 36 KGPWSAEEDRILTRLVERHGARNWSLISRYIK-GRSGKSCRLRWCNQ 81 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 90 | 132 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++ +Ede ++ a++++G++ W++Iar ++ gRt++ +k++w++ Lj5g3v0065670.1 90 PFSVQEDETIIAAHARFGNR-WAAIARLLP-GRTDNAVKNHWNST 132 799*****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.734 | 31 | 86 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.38E-31 | 33 | 129 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-16 | 35 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-17 | 36 | 81 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 37 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.13E-15 | 38 | 80 | No hit | No description |
SMART | SM00717 | 4.8E-15 | 87 | 135 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.93 | 88 | 137 | IPR017930 | Myb domain |
CDD | cd00167 | 6.70E-12 | 90 | 133 | No hit | No description |
Pfam | PF00249 | 2.8E-14 | 90 | 132 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-22 | 90 | 136 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MEAPNRSSST TTSSSDSCSS DSNPRSNNPN RPERIKGPWS AEEDRILTRL VERHGARNWS 60 LISRYIKGRS GKSCRLRWCN QLSPTVEHRP FSVQEDETII AAHARFGNRW AAIARLLPGR 120 TDNAVKNHWN STLKRRVPGG GGGSHEVGPS SSGSAAARME DDDPLTALTL APPGIGNSSV 180 EEVVADHPHN YQQHHPRQAP XLPATPPPAV AVAGECSGGV LGCDERCDCE GSEGIRVFQY 240 FSQLGFSLIN FSSFYRFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 9e-41 | 32 | 137 | 54 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 9e-41 | 32 | 137 | 54 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.15141 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj5g3v0065670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027356408.1 | 7e-84 | transcription factor MYB77-like | ||||
TrEMBL | A0A1S2Y9P9 | 2e-79 | A0A1S2Y9P9_CICAR; transcription factor MYB1-like | ||||
STRING | XP_004501595.1 | 3e-80 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5074 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 5e-57 | myb domain protein 73 |