PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v3112910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 466aa    MW: 51777.8 Da    PI: 6.5615
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v3112910.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033114136123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+Cp+C+++F++ ++   H  t+
  Lj4g3v3112910.1 114 YECPICKQPFRSEEEVSEHVDTC 136
                      99**************9999877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.20.905.7E-102552No hitNo description
SuperFamilySSF1435031.11E-17177256IPR018997PUB domain
CDDcd092121.65E-19177261No hitNo description
PfamPF094095.8E-17179254IPR018997PUB domain
SMARTSM005801.3E-16179246IPR018997PUB domain
SuperFamilySSF542366.98E-14326439IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.905.7E-10343437No hitNo description
PROSITE profilePS5003311.192355439IPR001012UBX domain
PfamPF007895.6E-6357406IPR001012UBX domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MGDMKDKVKG FMKKVNNPFT SSSSGKFKGQ GRVLGSSSSS SSSSAPINPN RNPTPRLTPT  60
QNPNPNSKPR PASTTNHEPS PQKTNRNPGD GFDPFDSLVT SSNRSQNGYS LNVYECPICK  120
QPFRSEEEVS EHVDTCLSTP AEGDCEKGVS ELALTEAESQ NSELEVCVGT FLSGNPSEGS  180
LDVVLKLLRN IAREPENVKF RKIRMSNPKI KEAVAEVTGG IELLSFLGFE LREENGDTWA  240
VMEVPTEEQI KVIKKALVLL EPPLVEQPSK RDNLVTSTSA EKDVKAEPKK VDRQVKVFFA  300
VPESVAAKIE LPDSFYKLSA EEVRREAELR RKKLEESQLL IPKSLREKQA KAARRRYTKT  360
IIRIQFPDGV VLQGVFSPWE PTTALYEFVS SALKEQALEF ELMHPVVIKR RVIPHFPKAG  420
ENAKTIEEED LVPSALIKFK PLETDSVVFT GLRNELLEIS EPLVNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ifs_A2e-1430643919146Tether containing UBX domain for GLUT4
5ifs_C2e-1430643919146Tether containing UBX domain for GLUT4
5ifw_A9e-1531043923146Tether containing UBX domain for GLUT4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.201060.0floral bud
Functional Description ? help Back to Top
Source Description
UniProtFacilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269|PubMed:19176722, ECO:0000269|PubMed:23301616, ECO:0000269|Ref.8}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v3112910.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269|PubMed:19176722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045360.0AP004536.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT15N19, TM0097b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530725.10.0plant UBX domain-containing protein 2
RefseqXP_006584861.10.0plant UBX domain-containing protein 2
SwissprotQ9ZU930.0PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBLI1KQ730.0I1KQ73_SOYBN; Uncharacterized protein
STRINGGLYMA08G04760.60.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89442529
Publications ? help Back to Top
  1. Suzuki T,Park H,Till EA,Lennarz WJ
    The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway.
    Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7
    [PMID:11587532]
  2. Rancour DM,Park S,Knight SD,Bednarek SY
    Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48.
    J. Biol. Chem., 2004. 279(52): p. 54264-74
    [PMID:15498773]
  3. Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC
    Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction.
    Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45
    [PMID:23301616]