PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v3061530.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family CPP
Protein Properties Length: 551aa    MW: 59303.9 Da    PI: 7.7362
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v3061530.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.72.7e-1482120241
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      ++k+CnCk+skClk+YCeCfa+g +C+  C+C +C N+ +
  Lj4g3v3061530.1  82 KQKQCNCKHSKCLKLYCECFASGIYCDG-CNCVNCYNNVD 120
                      89**************************.********986 PP
2TCR512.8e-16166205140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Lj4g3v3061530.1 166 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 205
                      589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.0E-1681121IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.86182206IPR005172CRC domain
PfamPF036383.8E-1183118IPR005172CRC domain
SMARTSM011148.4E-20166207IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.0E-12169204IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MGEGEGGGDC PPNNASLEGV LLPSKKLARQ LDFTAFGGVP PEPPQPPPTL PLLPSVRPVK  60
PESPKSKSRT NFEIKDTTTP KKQKQCNCKH SKCLKLYCEC FASGIYCDGC NCVNCYNNVD  120
NEAARREAVE ATLERNPNAF RPKIASSPHG TRDIREEAGE ILILGKHNKG CHCKKSGCLK  180
KYCECFQANI LCSENCKCMD CKNFEGSEER QALFIGDQNN NIAHIQQAAA ANAAITGAIG  240
SSGFSSPPVS RKRKSSELFF GPTMKDPSVG RLGQQANHVR AHAPSSSMSP IPGARVGPTS  300
GPSKFMYRSL LADIIQPQHL KELCSVLVLV SGQAAKTLTD QKNLMDKHAE DQTETSLASS  360
TQEQLPSQKD VDVEKAMADD RSSANQADKI SPGNSSSEEA DVPKGRPMSP GTLALMCDEQ  420
DPMFMTASSP IGTMARQCNP SSQSPYGQGM TENHAEQERI VSTKFRDFLN RVITMGEINE  480
TKCSSLARSE LESQKDPIIN GIANASTERT QQQGATSNGV AKAIGNSITS TSLVPRSPVP  540
ENGESKPKVE K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-308321411131Protein lin-54 homolog
5fd3_B7e-308321411131Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249254SRKRKS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v3061530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-101AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028233843.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A445KT980.0A0A445KT98_GLYSO; Protein tesmin/TSO1-like CXC 5 isoform A
STRINGGLYMA07G09380.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-153Tesmin/TSO1-like CXC domain-containing protein