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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v3030590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C3H | ||||||||
Protein Properties | Length: 381aa MW: 42118.3 Da PI: 7.4785 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.4 | 7.8e-06 | 134 | 154 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck d C +aHg Lj4g3v3030590.1 134 ACPDFRK-GSCKKADACEYAHG 154 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.08 | 81 | 118 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-4 | 129 | 155 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.202 | 130 | 156 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 14 | 164 | 187 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.643 | 164 | 188 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MIGEHRRANP TVHVPPWTIH DDPTAEIYSP YFAADGIAVD GGEFSPQYMH EALAALQRYL 60 PSNEVDAESD SDALGRDSDA PVDAYSCDHF RMYEFKVRRC ARGRSHDWTE CPYAHPGEKA 120 RRRDPRKFHY SGTACPDFRK GSCKKADACE YAHGVFECWL HPARYRTQPC KDGTSCRRRV 180 CFFAHTPEQL RLVPQQSPRS MNSADSYDGS PMRNAAAAMP FMSSPVLISS PPVSPRGDSP 240 PMSPMAQSLS RSLGSSSINE MVASLRLGKM KSMPPNRNIQ MGSPGFGSPR GSMLRLRPGF 300 CSLPTTPTQA PVPGRSGVSY FDLWDQDLEE EPVMERVESG SVIRAKMFEK LSKENSLDRS 360 GSDSGQTGGA PDVGWVSELV K |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.11700 | 0.0 | cell culture| protoplast| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v3030590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004513076.1 | 0.0 | zinc finger CCCH domain-containing protein 20 | ||||
Swissprot | Q9M0G2 | 1e-144 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A1S2Z118 | 0.0 | A0A1S2Z118_CICAR; zinc finger CCCH domain-containing protein 20 | ||||
STRING | XP_004513076.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2056 | 31 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 1e-134 | C3H family protein |
Publications ? help Back to Top | |||
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