PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2963430.1
Common NameLjGL3
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 461aa    MW: 51846.3 Da    PI: 6.0016
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2963430.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.42.9e-14267313455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h   ErrRR+++N++f +Lr+++P++      K +K++iL  A+eY +sL+
  Lj4g3v2963430.1 267 NHVLSERRRRAKLNERFLTLRSMVPSN-----IKDDKVSILDDAIEYFRSLE 313
                      78999*********************9.....69***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.082263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-12266317No hitNo description
SuperFamilySSF474593.53E-17266331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-11267313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-16267327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-13269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MEGVIELGTT DHVSEDLHLI ERIKTSFLNI LHANDPLKSG ATSKAREEES VACVAAFDHN  60
AYNAELIPEV GYGIINTTTS PDGSSNALQA NQPPDETFMV DRINRGSTSQ FQSWQVVDDE  120
LSNCVHNSVN SSDCISQTFA SPEKIGSAPN VENLSDLQKC NNQKMTLVDP LSDDWHYQKV  180
LSALLKNSDQ LNIGMHFQNF YQESIFSIWK KGGPMDCQRP RVGASQNLLK KVLFEVPRMH  240
LDGLLESQEE NDYKEGTRLE ADENGMNHVL SERRRRAKLN ERFLTLRSMV PSNIKDDKVS  300
ILDDAIEYFR SLEKRIRELE AQRDITNVET RAKSSPQDMV ERTSDHYSNK INNGKKSVVK  360
KRKICDMEKT NSDALKVSST NDVTITMNDN DVVIEITCSP RAGRLMEIME ALNSLNIYFK  420
SVQSTEADGH LYLTIKSKLT GPTNATAKRI KQALQKVVLK S
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2963430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4922840.0AB492284.1 Lotus japonicus LjGL3 mRNA for bHLH transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027341659.10.0transcription factor EGL1-like
TrEMBLD7UPI40.0D7UPI4_LOTJA; BHLH transcription factor
STRINGGLYMA08G01810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.14e-87bHLH family protein