PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2916450.4
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family SBP
Protein Properties Length: 391aa    MW: 42828.8 Da    PI: 8.3838
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2916450.4genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP124.83.7e-39105181278
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      C v+gC++dls++++yhrr kvCe hsk ++v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  Lj4g3v2916450.4 105 CLVDGCQSDLSKCRDYHRRQKVCELHSKRAQVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 181
                      **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.7E-3198166IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.564102179IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.8E-36103184IPR004333Transcription factor, SBP-box
PfamPF031107.2E-29105178IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MEWNLKASSW DLSEVDQAAT IPNIETVDHG SINRFGVYRT KGEFSVDLKL GQLGNSSNEL  60
VAAKSKLDVA AGGVSKMTTT TPSSSSSGSS KRARAINNGT QRVSCLVDGC QSDLSKCRDY  120
HRRQKVCELH SKRAQVTIGG HKQRFCQQCS RFHSLEEFDE GKRSCRKRLD GHNRRRRKPQ  180
PEPLTRSCDF LSNYQGTQLL PFSSPHVYPP TAVVNPAWAG VVTPAADVRP HSHNQHQQQI  240
HMVDKQDLFL GSSPSSYKEG KQVAFMPGDQ NPHLPAASIG HKFGRPSPFA ESDGLRCKNM  300
FCDSLTSSVQ ESSCALSLLS SPQAHNTAGN GFNQMVNPHS SLMQPLGLSL HDNSMGPVYS  360
GCDDHCSSMY NVGSSGSQGN EAPSMFPFQW E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-261051781184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161178KRSCRKRLDGHNRRRRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.40920.0floral bud| pod
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2916450.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019457641.10.0PREDICTED: squamosa promoter-binding-like protein 13A isoform X2
TrEMBLA0A4P1RTK90.0A0A4P1RTK9_LUPAN; Uncharacterized protein
STRINGGLYMA05G38180.80.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-74SBP family protein