PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2882190.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 235aa    MW: 26677.8 Da    PI: 8.4543
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2882190.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.87.7e-48141411128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrF+Ptdeelv +yLk kv + +l++ ++i+++++++++PwdLp +++  e+e yfFs++++ky++g+r nr+t+ gyWkatg+dk++ s
  Lj4g3v2882190.1  14 LPPGFRFQPTDEELVFQYLKCKVFSFPLPA-SIIPQINVCSYDPWDLPGNCD-YEQERYFFSSKESKYRNGNRMNRKTNCGYWKATGSDKKISS 105
                      79****************************.89***************6554.46899***********************************9 PP

              NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +  ++  +g++ktLvfy+g++p+g+ktdWv+heyrl
  Lj4g3v2882190.1 106 StsNDGIMGIRKTLVFYQGKSPNGSKTDWVLHEYRL 141
                      8666667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-5510169IPR003441NAC domain
PROSITE profilePS5100553.35514169IPR003441NAC domain
PfamPF023654.8E-2515141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEKLNFVKNG VSRLPPGFRF QPTDEELVFQ YLKCKVFSFP LPASIIPQIN VCSYDPWDLP  60
GNCDYEQERY FFSSKESKYR NGNRMNRKTN CGYWKATGSD KKISSSTSND GIMGIRKTLV  120
FYQGKSPNGS KTDWVLHEYR LIGVETSACN STQNLNEIGD WVLCRVLMKK RSRESDGGTT  180
HNMNMQNPRL FDFMMVSNRS NSSSSSSCSS SSNYNFMEVS SNAPDQEGTS GYADF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-471417417170NO APICAL MERISTEM PROTEIN
1ut4_B4e-471417417170NO APICAL MERISTEM PROTEIN
1ut7_A4e-471417417170NO APICAL MERISTEM PROTEIN
1ut7_B4e-471417417170NO APICAL MERISTEM PROTEIN
4dul_A4e-471417417170NAC domain-containing protein 19
4dul_B4e-471417417170NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2882190.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0063921e-155AP006392.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT39E03, TM0266, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027343159.11e-125NAC domain-containing protein 83-like
SwissprotQ9FY937e-72NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A445J8H21e-121A0A445J8H2_GLYSO; NAC domain-containing protein 83
TrEMBLI1KP451e-121I1KP45_SOYBN; Uncharacterized protein
STRINGGLYMA08G01280.11e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-73NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]