PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2882120.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 327aa    MW: 36560.2 Da    PI: 6.9022
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2882120.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.5e-10151198455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i ++++ L++l+P +    +k   Ka +Le+ ++Y++sLq
  Lj4g3v2882120.1 151 SHSLAERVRREKISERMNMLQQLVPGC----DKVTGKALVLEEIINYVQSLQ 198
                      8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.29E-11145202No hitNo description
SuperFamilySSF474596.54E-17145213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.58147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-17147212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-7151198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-10153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAAFSHHHYH PFLVDSTSRF IKMSSLEDEL LQPHINTTTL HQETSFSVTE TSSVDQSSKI  60
TISDSELSVE KNQSPETSMV VASMEKKRRS RNGSPLSKDP KGGSKKQKKG NGGVKEEDMA  120
KEEKKDKKKG PEEPSTGYIH VRARRGQATD SHSLAERVRR EKISERMNML QQLVPGCDKV  180
TGKALVLEEI INYVQSLQHQ VEFLSMKLAS VNPMLFDMAM DLDNLLVRPE QKVNSLASPP  240
LVLPCVPLCN PNPGTTFADT STLNPSTSFP TANHDYLLDY PCSDFLQGQQ RPNFLCEHTG  300
GPFWDAEDQR QKFLNPYGYG NNSCSLN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2882120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0060981e-164AP006098.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT10G08, TM0175, complete sequence.
GenBankAP0063921e-164AP006392.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT39E03, TM0266, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027342269.11e-140transcription factor bHLH137-like
RefseqXP_027342270.11e-140transcription factor bHLH137-like
TrEMBLC0JP260.0C0JP26_LOTJA; Putative basic helix-loop-helix protein BHLH8
STRINGXP_007137888.11e-123(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-48bHLH family protein