PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2871910.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Trihelix
Protein Properties Length: 355aa    MW: 39427.2 Da    PI: 6.6871
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2871910.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.83.2e-1952153186
         trihelix   1 rWtkqevlaLiearremeerlrrgk................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                      rWt+qe+l+Lie ++ +e+    g                    ++W+ vs+ ++++g++r+++qC+++w nl ++++kik++e + ++e++s 
  Lj4g3v2871910.1  52 RWTRQETLVLIESKKLVENGEHGGYhrfrspasssglvsphHGDHKWDLVSSLCQQHGVKRGAVQCRKRWGNLLTDFRKIKKWETSIKEETESF 145
                      8**************6665544332223344555677777799********************************************9999999 PP

         trihelix  79 cpyfdqle 86 
                      + + ++l+
  Lj4g3v2871910.1 146 WIMRNDLR 153
                      99988885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-549127IPR009057Homeodomain-like
PfamPF138373.0E-1151148No hitNo description
PROSITE profilePS500906.16852125IPR017877Myb-like domain
SuperFamilySSF466897.18E-592133IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MSQQPSDQVI MAAPQNSETQ NGPSSAVVVA AAPAPAAESP PVERIKATRH PRWTRQETLV  60
LIESKKLVEN GEHGGYHRFR SPASSSGLVS PHHGDHKWDL VSSLCQQHGV KRGAVQCRKR  120
WGNLLTDFRK IKKWETSIKE ETESFWIMRN DLRKEKKLPG FFDAVVYNVL DGGVCTVGAF  180
PLTLVKMSEG KTEKTGHGVE GVGAEQGEEE EGEEGEEEED EAIVDSEKMG WSTEEENFET  240
NSNGVRVSGQ VKTPIPRRTR MRGGLQFTPT FTLPNSGYHG EPVQEGPKRR RISPENSEDD  300
IVKVMRRNSD ILKAHLGAQN MNQQLAREQQ KQQTESLVAT LGKLADALTK IADKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287291KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2871910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004503841.11e-137trihelix transcription factor ASR3-like
TrEMBLA0A1S2YEZ51e-136A0A1S2YEZ5_CICAR; trihelix transcription factor ASR3-like
STRINGXP_004503841.11e-137(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-60Trihelix family protein