PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2754300.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 510aa    MW: 57882.8 Da    PI: 4.3951
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2754300.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS272.21.7e-831354991373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg..dp.mqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                      lv+lLl++Aeav++++  la++++++l + as+ +  d+ ++Rla +f+++L  + ++ +++l   + p +t+    ++++ +l++++e+sP++
  Lj4g3v2754300.1 135 LVDLLLTAAEAVEAQNWYLASEIIEKLTNDASSLQngDSlLNRLALFFAQGLFDKSSSPTPKLQYYCDPVSTQ----TDTFCVLQILQELSPYV 224
                      6899***********************999665431354279****************999999877777664....7999999********** PP

             GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      kf+h+taNqaIlea++g e vHiiDfdi++G+QWp+L+  La R+  ++ slR+T++   +++s+ + ++tg+rL++fA++++ pf fn +++ 
  Lj4g3v2754300.1 225 KFAHFTANQAILEATDGVEDVHIIDFDIMEGIQWPPLMVDLAMRKsTSTTSLRVTAITV-DQQSAASAHQTGRRLEEFAASINFPFTFNQVMMV 317
                      ******************************************99956677********9.668999************************8666 PP

             GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsl.ea 273
                      + edl+  eL    g +l+Vn+++  + ++++s sl +   ++L+ v +lsPk+vv+ve+e    +++ s sF+e f+eal++y+a+ dsl + 
  Lj4g3v2754300.1 318 SEEDLQRIEL----GHSLIVNCMI-HQWMPNRSFSLVK---TFLDGVTKLSPKLVVLVEEElfnfSKLKSMSFVEFFCEALHHYTAISDSLaSG 403
                      6666655555....999******9.5667888899988...********************8776677999********************555 PP

             GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWre.rleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                        ++++ e + +E+++lg +i + v +   er+er+     W+e  ++  GFk v +s+++ +qak l++ ++ +gy v+ e+  l l+Wk+rp
  Lj4g3v2754300.1 404 MWGSHKVEFALIEKQVLGLRILDSVRQFPCEREERML----WEEgLFSLKGFKRVGVSSSNISQAKFLVSLFG-KGYWVQFEKCRLALCWKSRP 492
                      55666689999********************999988....998356789***********************.9******************* PP

             GRAS 367 LvsvSaW 373
                      L+++S W
  Lj4g3v2754300.1 493 LTVASIW 499
                      ******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.474109481IPR005202Transcription factor GRAS
PfamPF035145.9E-81135499IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MNVMDYEQFD CSFTPSFMNQ LHECTLENVN ANAFPIQEDD LLSPNSILDE MFDHDQSENL  60
SPPNTILDEI FDQQSMEELL QQHNQDFDVM NLDLGNELCH GVSQITQKNV HVSKEADKDS  120
YLNGIQAELM EETSLVDLLL TAAEAVEAQN WYLASEIIEK LTNDASSLQN GDSLLNRLAL  180
FFAQGLFDKS SSPTPKLQYY CDPVSTQTDT FCVLQILQEL SPYVKFAHFT ANQAILEATD  240
GVEDVHIIDF DIMEGIQWPP LMVDLAMRKS TSTTSLRVTA ITVDQQSAAS AHQTGRRLEE  300
FAASINFPFT FNQVMMVSEE DLQRIELGHS LIVNCMIHQW MPNRSFSLVK TFLDGVTKLS  360
PKLVVLVEEE LFNFSKLKSM SFVEFFCEAL HHYTAISDSL ASGMWGSHKV EFALIEKQVL  420
GLRILDSVRQ FPCEREERML WEEGLFSLKG FKRVGVSSSN ISQAKFLVSL FGKGYWVQFE  480
KCRLALCWKS RPLTVASIWV PMTNLSDKVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-3314350327382Protein SCARECROW
5b3h_A1e-3314350326381Protein SCARECROW
5b3h_D1e-3314350326381Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2754300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0105030.0AP010503.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT05B12, TM1884, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027339768.10.0nodulation-signaling pathway 2 protein-like
TrEMBLG7LD660.0G7LD66_MEDTR; GRAS family transcription factor
STRINGAET046930.0(Medicago truncatula)
STRINGAET047050.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131482130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.16e-51GRAS family protein