PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bZIP

Protein Properties

Length: 376aa MW: 42063.5 Da PI: 8.3971

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj4g3v2690710.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	25.9	2.2e-08	246	292	17	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 A+rsR RK+++i+eLe+ v++L+ae ++ ele l+++ l +e+ Lj4g3v2690710.1 246 AQRSRVRKLQYIAELERNVQVLQAEGSEISAELEFLNQQNLILSMEN 292 89***********************************9998887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.2E-4	235	294	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.73E-16	237	285	No hit	No description
SuperFamily	SSF57959	3.75E-6	246	288	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.1E-5	246	289	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MANSKGSSSV RNLMYPGKHA LLPPKSPFPS VSQAYADYLS IPGVGSKAVN KSREGSTHHQ 60 RTSSESHVIE EQPSWLDDLL NEPETPVRRG GHRRSSSDSF AYIDTANMSN ITYADQDEYK 120 YKNLISTPSW SSQDFDRNKD AYHIPMYAEM NLAKQKNRSW DSFSNGVTSL GGVPSGKDHV 180 AFQSSGSLTP CTPHEADGLP PTVNEKSESI KSGLQDARSS FERKDGSHAK SSASETDTKR 240 AKQQFAQRSR VRKLQYIAEL ERNVQVLQAE GSEISAELEF LNQQNLILSM ENKALKQRLE 300 SLAQEQLIKY LEQEVLEREI GRLRGLYQQQ LQPQQQPSSS HRRTNSRDLE SQFANLALKH 360 KDTNSGHDPA TGALRI

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MANSKGSSSV RNLMYPGKHA LLPPKSPFPS VSQAYADYLS IPGVGSKAVN KSREGSTHHQ  60
RTSSESHVIE EQPSWLDDLL NEPETPVRRG GHRRSSSDSF AYIDTANMSN ITYADQDEYK  120
YKNLISTPSW SSQDFDRNKD AYHIPMYAEM NLAKQKNRSW DSFSNGVTSL GGVPSGKDHV  180
AFQSSGSLTP CTPHEADGLP PTVNEKSESI KSGLQDARSS FERKDGSHAK SSASETDTKR  240
AKQQFAQRSR VRKLQYIAEL ERNVQVLQAE GSEISAELEF LNQQNLILSM ENKALKQRLE  300
SLAQEQLIKY LEQEVLEREI GRLRGLYQQQ LQPQQQPSSS HRRTNSRDLE SQFANLALKH  360
KDTNSGHDPA TGALRI

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.5429	0.0	cell culture\| floral bud

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj4g3v2690710.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT135583	0.0	BT135583.1 Lotus japonicus clone JCVI-FLLj-21M13 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027346207.1	0.0	uncharacterized protein At4g06598-like
Swissprot	Q8W3M7	2e-68	Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBL	A0A1S2YGU3	0.0	A0A1S2YGU3_CICAR; uncharacterized protein At4g06598-like
STRING	XP_004504198.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5123	26	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	1e-110	bZIP family protein

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315]