PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj4g3v2604770.2

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

G2-like

Protein Properties

Length: 408aa MW: 46389.1 Da PI: 6.9703

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj4g3v2604770.2	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.1	1.5e-31	96	149	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+ Lj4g3v2604770.2 96 PRLRWTPDLHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 149 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-29	92	150	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.628	92	152	IPR017930	Myb domain
SuperFamily	SSF46689	2.69E-14	94	150	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-22	96	151	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-8	97	148	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MSDRYEIHDE NERSEDQGDD NSIGSSQKLS SFDLNEDACS EDNTDINDDE ACDDEITGEE 60 YEKGKDEGTS TNRSSTSREG NGRRGGVRQY VRSKMPRLRW TPDLHLSFVH AVERLGGQER 120 ATPKLVLQLM NVRGLSIAHV KSHLQMYRSK KLDEAGQVLS QPYRSTQGFG RISQAHQPMI 180 PHQHFKMGNG GIILASNYNE HSYFQGLRPQ PSSLSHSDSH SKAIDSRHQQ WYSNHQPFRR 240 PSFEFVSSTS TALQTQGRSI ASNQIQLMDT TRLAPMRPSQ FLEEKKWPPL ETMNNHHHWK 300 KNYSSQSVLH QFGTTPAALK PAELSIGTNT RIKEFLSNPD EHHNPSNSLK LEFNPPFRIK 360 LNQEKLQIDK QCVPDLQLSL SQKNSNNDGG ETDHSRETQE INTKLSLS

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MSDRYEIHDE NERSEDQGDD NSIGSSQKLS SFDLNEDACS EDNTDINDDE ACDDEITGEE  60
YEKGKDEGTS TNRSSTSREG NGRRGGVRQY VRSKMPRLRW TPDLHLSFVH AVERLGGQER  120
ATPKLVLQLM NVRGLSIAHV KSHLQMYRSK KLDEAGQVLS QPYRSTQGFG RISQAHQPMI  180
PHQHFKMGNG GIILASNYNE HSYFQGLRPQ PSSLSHSDSH SKAIDSRHQQ WYSNHQPFRR  240
PSFEFVSSTS TALQTQGRSI ASNQIQLMDT TRLAPMRPSQ FLEEKKWPPL ETMNNHHHWK  300
KNYSSQSVLH QFGTTPAALK PAELSIGTNT RIKEFLSNPD EHHNPSNSLK LEFNPPFRIK  360
LNQEKLQIDK QCVPDLQLSL SQKNSNNDGG ETDHSRETQE INTKLSLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	97	151	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	97	151	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-17	97	151	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	97	151	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	97	151	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	97	151	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	97	151	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	97	151	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	97	151	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	97	151	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	97	151	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	97	151	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.16600	1e-145	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj4g3v2604770.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	2e-48	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020202513.1	0.0	two-component response regulator ARR14-like
Refseq	XP_020202514.1	0.0	two-component response regulator ARR14-like
TrEMBL	A0A445KPI0	0.0	A0A445KPI0_GLYSO; Putative Myb family transcription factor
STRING	GLYMA05G29161.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-37	G2-like family protein