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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v2604770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | G2-like | ||||||||
Protein Properties | Length: 408aa MW: 46389.1 Da PI: 6.9703 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.1 | 1.5e-31 | 96 | 149 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+ Lj4g3v2604770.1 96 PRLRWTPDLHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 149 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-29 | 92 | 150 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.628 | 92 | 152 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.69E-14 | 94 | 150 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-22 | 96 | 151 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-8 | 97 | 148 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MSDRYEIHDE NERSEDQGDD NSIGSSQKLS SFDLNEDACS EDNTDINDDE ACDDEITGEE 60 YEKGKDEGTS TNRSSTSREG NGRRGGVRQY VRSKMPRLRW TPDLHLSFVH AVERLGGQER 120 ATPKLVLQLM NVRGLSIAHV KSHLQMYRSK KLDEAGQVLS QPYRSTQGFG RISQAHQPMI 180 PHQHFKMGNG GIILASNYNE HSYFQGLRPQ PSSLSHSDSH SKAIDSRHQQ WYSNHQPFRR 240 PSFEFVSSTS TALQTQGRSI ASNQIQLMDT TRLAPMRPSQ FLEEKKWPPL ETMNNHHHWK 300 KNYSSQSVLH QFGTTPAALK PAELSIGTNT RIKEFLSNPD EHHNPSNSLK LEFNPPFRIK 360 LNQEKLQIDK QCVPDLQLSL SQKNSNNDGG ETDHSRETQE INTKLSLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-17 | 97 | 151 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-17 | 97 | 151 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-17 | 97 | 151 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-17 | 97 | 151 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-17 | 97 | 151 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-17 | 97 | 151 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-17 | 97 | 151 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-17 | 97 | 151 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-17 | 97 | 151 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-17 | 97 | 151 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-17 | 97 | 151 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-17 | 97 | 151 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.16600 | 1e-145 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v2604770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 2e-48 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020202513.1 | 0.0 | two-component response regulator ARR14-like | ||||
Refseq | XP_020202514.1 | 0.0 | two-component response regulator ARR14-like | ||||
TrEMBL | A0A445KPI0 | 0.0 | A0A445KPI0_GLYSO; Putative Myb family transcription factor | ||||
STRING | GLYMA05G29161.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3012 | 32 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 1e-37 | G2-like family protein |