PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2501680.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family M-type_MADS
Protein Properties Length: 184aa    MW: 20468.6 Da    PI: 10.2756
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2501680.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.36.4e-211457649
                     HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        rqvtfskRr g++KKA+ELS+LC+ e+a+++fs+ +k y +
  Lj4g3v2501680.1 14 PNTRQVTFSKRRSGLFKKANELSILCGSEIAIVVFSPGNKPYSF 57
                     567**********************************9998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.31E-26173IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-33160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.114161IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-19323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-241257IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MGRRKIEIAL VNDPNTRQVT FSKRRSGLFK KANELSILCG SEIAIVVFSP GNKPYSFGHP  60
SIDGVAAKFL QQEPNPNDGG STSNPNIAKG TDMNNCNLQL ADVMAKICEE EKKGAKLDKT  120
LKQHQMTTRS KCQDLQGSYK ELKAMVSKRL TEFEIADFMI QLSQGLVEGM TTTKQIAKKK  180
RRMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-18190187MEF2C
5f28_B3e-18190187MEF2C
5f28_C3e-18190187MEF2C
5f28_D3e-18190187MEF2C
6byy_A3e-18187184MEF2 CHIMERA
6byy_B3e-18187184MEF2 CHIMERA
6byy_C3e-18187184MEF2 CHIMERA
6byy_D3e-18187184MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177181KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2501680.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524404.11e-67agamous-like MADS-box protein AGL29
TrEMBLI1K5Y63e-66I1K5Y6_SOYBN; Uncharacterized protein
STRINGGLYMA05G35820.15e-67(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.18e-33AGAMOUS-like 29