PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2214800.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ARF
Protein Properties Length: 1142aa    MW: 127674 Da    PI: 6.5094
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2214800.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.69.9e-23126227199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +++
  Lj4g3v2214800.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVAKDLHDTTWSFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDE 216
                      99*****************************9545444.38************************************************..568 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      +++l+++++r+
  Lj4g3v2214800.1 217 KQQLLLGIRRA 227
                      8889****997 PP
2Auxin_resp118.45.7e-39252334183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s  rr +Gt++g+sdld+ rW+ S+Wr+L+
  Lj4g3v2214800.1 252 AAHAAANNSPFTIFYNPRASPSEFVIPLAKFNKAMYTQVSLGMRFRMMFETEESGVRRHMGTITGISDLDSARWKSSQWRNLQ 334
                      79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-44116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-42118241IPR015300DNA-binding pseudobarrel domain
CDDcd100179.19E-19125217No hitNo description
PfamPF023621.2E-20126227IPR003340B3 DNA binding domain
SMARTSM010197.9E-23126228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.167126228IPR003340B3 DNA binding domain
PfamPF065072.4E-34252334IPR010525Auxin response factor
PfamPF023091.5E-810101100IPR033389AUX/IAA domain
PROSITE profilePS5174525.3110151108IPR000270PB1 domain
SuperFamilySSF542771.32E-810281094No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009638Biological Processphototropism
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009785Biological Processblue light signaling pathway
GO:0010311Biological Processlateral root formation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1142 aa     Download sequence    Send to blast
MKAPSNCYLP NSGEGERKTI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TDFIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VNKYDKDAIL ASDMGLKQNR  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELVAKD LHDTTWSFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKQQL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KFNKAMYTQV SLGMRFRMMF  300
ETEESGVRRH MGTITGISDL DSARWKSSQW RNLQVGWDES TAGERPSRVS IWEIEPVVTP  360
FYICPPPFFR PKFPRQPGMP DDESDIENAF KRAMPWLGDD FGMKDASGSI FPGLSLVQWM  420
SMQQNNQFSA AQSGCFPPML SPNTLHSNLG TDDPSKLLSF QAPALSAPSL QFNKPNLPNQ  480
INQLHQSPVS WPQQQQQQQQ QQQQQQQQLQ LQHQQQQQQL QQQQQQQQQQ QLQQQQQQQL  540
QQQQSQQQQL QSLLQIPMNQ LQQPRQQQLP EPKNLPLPQQ QLPQQLGQQS QKAIMSNGVV  600
ASNQITNQLV LQQQQLLSGG ISPQQSIHSA SKTTFPLTSL PQESQFLQQI DQQASLLQRQ  660
QLPQQTQLQQ SSLHLLQQNQ PQRAPQQPPV ATMSQQTPSE QQLHLQLLQK LQQHQQHQQL  720
LSTSSPLLQP QLLQQQSTPQ QNQQLTQLPA SQHQTQQLGN NAFSTEKVLN SNSFSSSLMQ  780
PHQLPVNHPQ NTQKSLAITR APSTLTDGDA PSCSTSPSTN NCQISPSNLL KRNQQVPATL  840
GGSLVVESTS NLIQELQSKS DMQIKNEFSN VKGFDQLKYK GTITDQMEAS SSGTSYCLDP  900
GNVQQSLPLS NFCMEGDVQS HSRSNLPFDS NLDGLTPDPV LMRGYDSQKD LQNMLSNYGG  960
APRDIETELS TADISSQSFG VPNMTFNPGC SGDVGINDTG VLNNGLRANQ TQRMRTYTKV  1020
QKRGSVGRCI DVTRYKGYDE LRNDLARMFG IEGQLEDPQR TDWKLVYVDH ENDILLVGDD  1080
PWEEFVSCVQ SIKILSYTEV QQMSLDGDLG NVPIPNQACS GTDSGNAWRG PYDDNSAASF  1140
NR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1691535545388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2214800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0044720.0AP004472.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT17P02, TM0006, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027329331.10.0auxin response factor 19-like isoform X1
TrEMBLI1MS550.0I1MS55_SOYBN; Auxin response factor
STRINGGLYMA17G05220.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49183352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19